LOCUS BG078891 581 bp mRNA linear EST 12-MAY-2010 DEFINITION H3033C08-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3033C08 5', mRNA sequence. ACCESSION BG078891 VERSION BG078891.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 581) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG078891.1. Other_ESTs: H3033C08-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3033 row: C column: 08 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..581 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3033C08-5" /db_xref="taxon:10090" /clone="H3033C08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 158 a 144 c 121 g 158 t ORIGIN 1 ctcgcagctt cttcaaggaa atgcatcctt gacaatcgag tacgcctatg agagcgacag 61 cggtctctac tgctgtcgag tggaaatgaa gggatgggat ggcgtgcaga cactgaccac 121 ctcactgcag attcaaccag gaagcagttc agccaggact aaaggccttg ctattggact 181 ctccattttc tttctgcttc tggttcttgt gggcacatta gttatcacaa attacatcct 241 tatgaaaaag aggccagaat ctccaagctt ggtagcatta tgtgtttcta agatcagaac 301 tttactaaat aaagaggttg cttcaccatg agcacaagat gacgtctaca atattgaaga 361 cagtcctcat atcaaagctt aagtttcagg agaagacctc tacggcatat caccagtctg 421 gacgcccctg aagtgtcaag actatttccc gtcagttcat cttgaattcc cactttgcag 481 ctgcagtgga gaggatggac ctctagctgt ctcttctcac actcactgtt gacatgatgc 541 tgtctctcca cactatagat ccttctttca aacacgaaca c //