LOCUS BG078679 595 bp mRNA linear EST 12-MAY-2010 DEFINITION H3030F06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3030F06 5', mRNA sequence. ACCESSION BG078679 VERSION BG078679.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 595) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG078679.1. Other_ESTs: H3030F06-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3030 row: F column: 06 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..595 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3030F06-5" /db_xref="taxon:10090" /clone="H3030F06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 148 a 106 c 133 g 208 t ORIGIN 1 gtttggacct tgctttgtgt gtgttttttg taaatgtacc tttgaggcac gttgtgtgac 61 aggaggtata caaatgatac acgcagactg ggggaagccc gatcccgaat ttttcaaggt 121 ttgaagtgtt aacactccgc ttcatgtgcc tgttttagtt tagaaaaatt ctggctggat 181 tatggaggtg atggtatcat gaaatcacct atttggcagg gtccaatttt ctgaacacgt 241 tcattcttga ttaactattt taactcgaac ctaacaagta ttttaagtaa gctgaagaag 301 cttgtgtagt atacgctcct tgatttttct atggcaattg tacacctctt cagcctttta 361 tgtaggtgtc tatacttagt ggcagagttt ggaatgtttg gtcttatttt aaacctttgc 421 cagtcgattc atagtggcag cgtagacatt cattactaaa ttacaagctc agactcagtg 481 ggtccaggct ggagcttcaa gttcatttct cataagcact ttggagcact gttggtatgt 541 ggggccacat tctaagctca aggttctgtg gaactttcaa atcttaacaa tttgt //