LOCUS BG078627 597 bp mRNA linear EST 12-MAY-2010 DEFINITION H3030A04-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3030A04 5', mRNA sequence. ACCESSION BG078627 VERSION BG078627.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 597) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG078627.1. Other_ESTs: H3030A04-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3030 row: A column: 04 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..597 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3030A04-5" /db_xref="taxon:10090" /clone="H3030A04" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 189 a 131 c 142 g 135 t ORIGIN 1 ttttgctcga atgtggtatc tcttagatgg caaaatgcag ccccctggca aacttgcggt 61 tatagcatcc aacaaactgc aaggattaaa taaaccagtg taccatcagc tgagtgactg 121 tggagaccac gttgtcataa taaacacaag acatattgca ttttctggaa acaaatggga 181 acaaaaagtg tactcctcac atactggcta cccaggcggc tttagacaag taacagctgc 241 gcagcttcac cggaaagacc ccgtggcgat tgtgaaattg gctatttatg gcatgctgcc 301 caaaaacctg cacagaagga caatgatgca aaggctgcat cttttcccag acgaggatat 361 tccggaagat attcttaaga atttagtgga agagcttcct cagccacgga gagtgcctaa 421 acggctggac gagtacaccc aagaagaaat agaggctttc cccagagtgt ggactccacc 481 tgatgatttt cggatgtagg agaatggaaa tgatagaaca ttacagcaag agactgaatg 541 tttcctgaag tattaccatg acccaaggca gagagaaacc atgggaactc cctgtgg //