LOCUS BG078576 580 bp mRNA linear EST 12-MAY-2010 DEFINITION H3029D05-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3029D05 5', mRNA sequence. ACCESSION BG078576 VERSION BG078576.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 580) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG078576.1. Other_ESTs: H3029D05-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3029 row: D column: 05 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..580 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3029D05-5" /db_xref="taxon:10090" /clone="H3029D05" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 187 a 112 c 136 g 145 t ORIGIN 1 cttactggtt aatgctattt ctcacaatga tgcagattag gaaaattgaa gtattcagga 61 aacaggggtg gttgctaagg ttccgtacct gctctttata aatttatagt ggctttatcc 121 tgacatagga aagttcagct gcaggggagg aggaggagac agtcttcctc tttaagttac 181 agagagccgt aagctaaagg acctgcctag gattataata tttgaagaat gaacttttaa 241 attcttgcaa taacgaaacc ctgcctcctt gactatttga actcagttct ccatctaaac 301 tggggaaaaa aacaaacaaa gaaacaaaca aaaaaataac attccgtatt agcatagtag 361 tccaaattgt atcaagcaaa aaatgtatgg ctagacaaca ccagtaagaa tcctgctgct 421 ctgggggagg cggaaggaga gctggaaagt ctggagtatc gctccgttcc ctggcagaag 481 gttccagcca ggaggatgtg ctgaagatgg tctggtccta actgccagac acaatgtccg 541 tgacattaaa ggctccacat gattgaccac agcatgggag //