LOCUS BG077910 674 bp mRNA linear EST 12-MAY-2010 DEFINITION H3020D06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3020D06 5', mRNA sequence. ACCESSION BG077910 VERSION BG077910.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 674) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG077910.1. Other_ESTs: H3020D06-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3020 row: D column: 06 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..674 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3020D06-5" /db_xref="taxon:10090" /clone="H3020D06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 129 a 179 c 168 g 198 t ORIGIN 1 ggctcagctg tacccctagg aagtaatgtc cgtgctcatt ctgagaaatg ctgccctccg 61 tgtgtttggg attgttctta tttatcatag cttgtgtttt ttgtttctgt gttgcaatga 121 gtctgtcaac ttagtttcct gtgttttttc aaagtaagcc accctcctgc tgcagcagat 181 gtcttccaga aggttctagc acagcccata catctgcggc ccgaggcaca ttaaccctca 241 gcagtccaca gcagaggggc ctcgctgagt ttccttagca tctttgttct gctggtctgg 301 aagaaccttt ggctctctct gtgttgcgca caaaagcttt gagaggtgta gctcttgatt 361 aatcctggac tgggcaagag cctggtcctg ctgtgaggcc cttgcagatt tggtgtggtt 421 tgctgtcctc agagctccta ctctgagatg cagaagtctt agtctgccat tcatgagcac 481 agagtcatgg gtggagaatc ctgagtgtct cagctcacac ccagcgctta taaaggcgtg 541 ctgtgctgcg aggctgagga tcgtgtaccg cgccttccct gccagctcca gcagaatcca 601 gatcagccta catagtgctc tgtgccgcag ccaggtcctc tcagacttga gaaaaccctt 661 ttccttctcc cctg //