LOCUS BG077298 515 bp mRNA linear EST 12-MAY-2010 DEFINITION H3013F11-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3013F11 5', mRNA sequence. ACCESSION BG077298 VERSION BG077298.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 515) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG077298.1. Other_ESTs: H3013F11-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3013 row: F column: 11 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..515 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3013F11-5" /db_xref="taxon:10090" /clone="H3013F11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 139 a 102 c 115 g 159 t ORIGIN 1 ccaagaaggg tcattgtgct tttttagata aatcctgaca tgggctactt cagatgcaaa 61 gtaaaaccca agctctcacc tcacgtgttt cactctgaat gtggccagcg gaagacacga 121 cttgcctgtt agcacactgt tacttgtaaa cggaaatgct gaagacactc agctttcttt 181 acagaaaatc aaggtttcct gatgactggg cacatgaggt gagctgacag tcttggttca 241 gggtgatcgg attgtgtaga ctgacagtct gtgtactgct ggctaagtgt gatagcatct 301 gcagttctct ccctcccggt agttactgaa ctctttaaaa ctggtattgt gacgttacaa 361 caatgttttg cgccaatttt ataaaccttt acagtgcaat atgtgttact tttctgaggc 421 aaaccaaagg tatatttctc aaggttctgc tgccatcagc agcatttgat ggaggatttt 481 ttttatacat ttgtaatagg tagagatgaa acaga //