LOCUS BG076960 580 bp mRNA linear EST 12-MAY-2010
DEFINITION H3009B09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone
H3009B09 5', mRNA sequence.
ACCESSION BG076960
VERSION BG076960.2
DBLINK BioSample: SAMN00163148
KEYWORDS EST.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 580)
AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X.,
Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H.,
Wood,W.H. III, Becker,K.G. and Ko,M.S.H.
TITLE Genome-wide expression profiling of mid-gestation placenta and
embryo using a 15,000 mouse developmental cDNA microarray
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000)
PUBMED 10922068
COMMENT On Jan 26, 2001 this sequence version replaced BG076960.1.
Other_ESTs: H3009B09-3
Contact: George J. Kargul
Laboratory of Genetics
National Institute on Aging/National Institutes of Health
333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA
Email: cdna@lgsun.grc.nia.nih.gov
This clone set has been freely distributed to the community. Please
visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details.
Plate: H3009 row: B column: 09
Seq primer: -21M13 Reverse
POLYA=No.
FEATURES Location/Qualifiers
source 1..580
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="niaEST:H3009B09-5"
/db_xref="taxon:10090"
/clone="H3009B09"
/sex="clones arrayed from a variety of cdna libraries"
/clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set"
/dev_stage="Clones arrayed from a variety of cDNA
libraries"
/lab_host="DH10B"
/note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This
clone is among a rearrayed set of 15,247 clones from 11
embryo cDNA libraries (including preimplantation stage
embryos from unfertilized egg to blastocyst, embryonic
part of E7.5 embryos, extraembryonic part of E7.5 embryos,
and E12.5 female mesonephros/gonad) and one newborn ovary
cDNA library. Average insert size 1.5 kb. All source
libraries are cloned unidirectionally with Oligo(dT)-Not
primers. References include: (1) Genome-wide expression
profiling of mid-gestation placenta and embryo using a
15,000 mouse developmental cDNA microarray, 2000, Proc.
Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale
cDNA analysis reveals phased gene expression patterns
during preimplantation mouse develolpment, 2000,
Development, 127: 1737-1749; (3) Genome-wide mapping of
unselected transcripts from extraembryonic tissue of
7.5-day mouse embryos reveals enrichment in the t-complex
and under-representation on the X chromosome, 1998, Hum
Mol Genet 7: 1967-1978."
BASE COUNT 126 a 124 c 120 g 210 t
ORIGIN
1 ggcaaatgaa actgagtcct tctttatttc ttgggatgat ttctgggacg tcatttgcaa
61 tctaataatt agtgggtgtg attctacact aactatacta ggcatgagtg ctgtaatttc
121 ttcaatagcc cattatttgg gccttggaat attggccttt attggatcaa ctgaagaaga
181 tgacaggcgg cttggctttg tagctcctgt tttatttttc attttggctc ttcagactgg
241 tttaagtggg ctaagacctg aagagagact tattcgctta agtagaaaca tgtgcctttt
301 attaactgca gtcctgcatt tcatccatgg gatgacagac cctgtattaa tgtcgctcag
361 tgcctcccat gtgtcatctt tccatagaca ctttcctgtg ctgtttgtct ctgcttgcct
421 gttcattctc cctgtcttac tcagttatgt cctttggcat cactatgcac taaatacatg
481 gctgtttgca gttacagcct tttgtgtgga actctgcttg aaggtaatcg tctccctcac
541 tgtctacacg ctgttcatga ttgatggcta ctataacgtc
//