LOCUS BG072999 488 bp mRNA linear EST 26-JAN-2001 DEFINITION H3117D12-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3117D12 3', mRNA sequence. ACCESSION BG072999 VERSION BG072999.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 488) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3117D12-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3117 row: D column: 12 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..488 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3117D12-3" /db_xref="taxon:10090" /clone="H3117D12" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 129 a 117 c 91 g 151 t ORIGIN 1 atttacaaaa tttatgtata atactcattt caacaggaca attttgaggg cggccaacta 61 tatacagttg ttaccacaac cacaattaag acaaagaata ttcccatggg cctttttaca 121 ggcaatccca tgtcccctcc agatgtagtc cccaaggaat ccctgggttt tgaaagcttt 181 gtttcatttt ctagactgga atctgcatat aggcttgctt ctggcttttt tcactcagca 241 caatactgta gagatcatcc cagatggggc attggttttt ccttgcagat gtttagacag 301 gatctactaa ataatttgtt ctttcattga ctgctgccca catgggctgt tctactttta 361 aagaaactac caaaccatca ggggacctgt gcaccttgcc agggatacac gcatccctac 421 caatggcttt ccatttccag acactggcat tccagctgga ccacttaggg ttaagtttta 481 cttgggcc //