LOCUS BG072985 583 bp mRNA linear EST 12-MAY-2010 DEFINITION H3117C09-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3117C09 3', mRNA sequence. ACCESSION BG072985 VERSION BG072985.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 583) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG072985.1. Other_ESTs: H3117C09-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3117 row: C column: 09 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..583 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3117C09-3" /db_xref="taxon:10090" /clone="H3117C09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 148 a 139 c 126 g 170 t ORIGIN 1 caatttgcca agctgtgact gtttattaac tgaccagatt acaaaaatac aatgggtgac 61 accttagttc atccgtctaa taagcctgtt tatctggtct tccctgttgc cagcatctcc 121 accttctaca aagggagttg tctttttctt catcccacct cgtggggaag ataacttgaa 181 gggccacagg aagttatttg cttccttgaa gcgtttcccg actgtataga tctcatgaat 241 tagatcctcc atgcagatga tgccaaactt accaagagac cgagcaatca aggaattatc 301 tgtcaaggca atccgcttct tgttgatttt gccgtagcct cgcttgtaga tgagctcgtt 361 tactgacttc aggttggggt acccccatgc aatgtatggc tccacaatcc gcagcatgtt 421 aattgaagcc ttgttgagct taacaaaggt gccattgaag atctgtcgaa gacgaaggag 481 ctgcagaacc ttacgaacct ttgggcttac tccattgata cctcgaattc tgatgacaaa 541 ggccagcttt ggttctgcgg gcacatagaa gttgccagct ttc //