LOCUS BG072980 621 bp mRNA linear EST 12-MAY-2010 DEFINITION H3117C03-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3117C03 3', mRNA sequence. ACCESSION BG072980 VERSION BG072980.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 621) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG072980.1. Other_ESTs: H3117C03-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3117 row: C column: 03 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..621 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3117C03-3" /db_xref="taxon:10090" /clone="H3117C03" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 166 a 119 c 145 g 191 t ORIGIN 1 aggtgctttg gttttattgg atcagtaaga ttaagatgac actgtgacta gtttccttgg 61 aaagaccata acaacagctt tgctcccata atctttactt gcatctgaag cctttgttgg 121 atgctgacac actgtagagt tgaggctggt tcctagagtc ataccttgag cagggcctgc 181 agtagtacct gtggcacact gtagagtctg cacactgtag agtctgcaca ctgtaggtgt 241 ggtaggtgat ccttttcttc agcctcctac cccagttgtg ggataaacag aggcttctgt 301 ttttaaaaaa tacagaatac aatttcatgt ctttggaatg tagaggagta cacatgaatg 361 tgaaaggtct cttttttgat aaaacagtaa ggacatattt ccaactttaa agttaattaa 421 tatataaaat ataaatgggc tctttatatg agtctgactc tgaggtccta catctggttc 481 tcagggagta acagttctcc tgctataaac ctgtgggcct aaagggtgtt gttctccatg 541 agaacatttc ctgggcagta ggagcagggt aggacagctt agaaccctgc agttgccact 601 gggactgagt ctatttccag c //