LOCUS BG072379 579 bp mRNA linear EST 12-MAY-2010 DEFINITION H3109H04-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3109H04 3', mRNA sequence. ACCESSION BG072379 VERSION BG072379.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 579) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG072379.1. Other_ESTs: H3109H04-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3109 row: H column: 04 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..579 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3109H04-3" /db_xref="taxon:10090" /clone="H3109H04" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 128 a 146 c 139 g 166 t ORIGIN 1 ccagtctgta tatttgcttt atttaagagt tgtatgccat ggtcccacag tttcagggtc 61 aactttggga agtttgtgcc ccagtactgt cactgggagg aaggggttca ggctgctcgg 121 gtccacagtc acccactgag cttcgaggtc catcgggcgc ttcttttggt gtggtctggc 181 tcgcagtggc tgttacttct tcatacacgc catcgcttct aacttgctga aaggaatttg 241 ctttctttcc ctgctcagaa accaaaggga cttctaagtt gtatttcttc tctctctgca 301 gcctgtgtat tttcacatag agaaccgtgt tcaacgaaaa cattattccc actgacagat 361 aaaacaggat gtgaaaccag acaggagctg atgactgggg accaagcact tggagctcca 421 actcagggct gcgcttaagg acactgctgt cctccgtggc tacctcacac cagtagaatc 481 cagcatcttc tctttccgcc cttgctatat ggtactctga ggatgtgttc ctgtactcca 541 ggatcttgct gcccacgtag aaggagaagt gaagctgta //