LOCUS BG070552 788 bp mRNA linear EST 12-MAY-2010 DEFINITION H3088E12-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3088E12 3', mRNA sequence. ACCESSION BG070552 VERSION BG070552.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 788) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG070552.1. Other_ESTs: H3088E12-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3088 row: E column: 12 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..788 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3088E12-3" /db_xref="taxon:10090" /clone="H3088E12" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 168 a 205 c 201 g 214 t ORIGIN 1 gctttaaaag actttattag aacttcaggg aacagtgatg ccttattttg gcagaaagat 61 ccagctcaga aaaacccagg gtgggtctgg ctctcaagag atgggtgtag actccatgac 121 accaggcctt gaagatcctt cttcattttg agggcatccg gaagccctga gttggtggga 181 tctgcagttc tgtgtttacc ttggcctgga gatactgctg cagcagggac tgcatctctg 241 cattctgctg ctccagagac tcattctcca tcagcagctt ggccctctcg gtcagcacga 301 gatagtattt ctccaaggcc ttgtacagcg catcccagag gttctgcttg aagaaaggaa 361 taaccgcagc cagggattcc cagtactccg tgtccttcga gttatctcga gtctctttct 421 tcaatttcag tactggctga gcgtccttag gcttcttcag ccccgtgaca aaggcctcca 481 gaatcttgag aacatcattg gggtggatga acctgggtga tgacaggtcc tcctgctctt 541 ccaactccct gctcgagagg cttgcgttgt caccttcctg ctcgtcctcc tgctctgtgg 601 gctcctgatc tgatttggac accatgcttc ccttgtctgt ctgggacatc agactcaaac 661 gctctagtgc tgacatcagg cttgtacgct ccacattgct atgaatggag gaactggcct 721 gggcagagga tagacggtgg gctcggtatc gaaggaagaa gttaccagct tgtataagtc 781 atctcgtc //