LOCUS BG070406 659 bp mRNA linear EST 12-MAY-2010 DEFINITION H3087A05-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3087A05 3', mRNA sequence. ACCESSION BG070406 VERSION BG070406.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 659) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG070406.1. Other_ESTs: H3087A05-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3087 row: A column: 05 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..659 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3087A05-3" /db_xref="taxon:10090" /clone="H3087A05" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 180 a 147 c 130 g 202 t ORIGIN 1 gaccagacta atgcttttta ttaaaaagtc actgcaagct ttggacagga aggaaacctg 61 aaggaaggat gacaactgga agaacatttc cacgttatca tctgttattc ttgtttttcc 121 cgtataggca tagtcaagaa atgcctttac agctttggag gacaagttag taatggtaac 181 acttccgtca tctctttctt tcatgtttac ttcgaacata gccctgaaaa agtcactgca 241 tgcagccaac acacaacgat gacatgggat tatttcttct ttcatgatta ttttgaagtc 301 ataaaagaca ttctgttctc taaaactctg cagcacactt aagattttct gtccatgatc 361 ttctgatgca aggtaatttt ttttcttctc agatgagatt ccattccatg agctttgttc 421 atttaaattg tatgaattat ccacagctaa ttccacctgt tcttagagct ttaattccag 481 cactcaggag acagagacag gtggatttct gagtttgaca caagcctggc ctatagagct 541 ggttccagga tagccagggc tacccgaaga aacctgcaac tgcagtcggt gaagtctcca 601 cccaggccca gcctgtaaac tccggctgcg attggcttgt gcgactgtct cgttagctc //