LOCUS BG067616 683 bp mRNA linear EST 12-MAY-2010 DEFINITION H3056D01-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3056D01 3', mRNA sequence. ACCESSION BG067616 VERSION BG067616.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 683) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG067616.1. Other_ESTs: H3056D01-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3056 row: D column: 01 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..683 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3056D01-3" /db_xref="taxon:10090" /clone="H3056D01" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 176 a 188 c 165 g 154 t ORIGIN 1 acagtacggg ccatttgagt cattattatt acaatatact ttgacaaaaa tagaatctca 61 tttcatatca atacaacaac aacaaacaca acagtttcct ggacggttac accactaaca 121 tttgaaaggt ctctatttac aattacagta gcaagagggc aggtttggga tgtggcctgg 181 aggtgggggg acaggaggta gcgagacaag gagcacgcag agagctggga ggtgggtcag 241 gggcagaagc tcagaggcct ggggaagggc ccgggcctca tctacaggag cctccatgtg 301 cccagtaagt actcttctgg acacaggtgc acaaagccaa gaggtgccct cctcaccctg 361 cccctgacaa gcctcctgct ctcagtgccc cagggaacca aaggacgact ctggcccatc 421 ctggagccac ttcaatgaag gtcctctccc aaatctccca gtacatggcc agctttcttt 481 aggattgggg taggctaaag gacggggagc tattgcactg tacatctcaa aggaaaagct 541 gggggtaggg tcccaattca ccacacccag tccttctgtc ctcatcagcc ctctttctac 601 agctgtctct ctccatgtta tctctagaga ttccaacctc aagccccttc cctggcctca 661 gattcctagg cagcctttct atc //