LOCUS BG063454 680 bp mRNA linear EST 12-MAY-2010 DEFINITION H3007D10-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3007D10 3', mRNA sequence. ACCESSION BG063454 VERSION BG063454.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 680) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG063454.1. Other_ESTs: H3007D10-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3007 row: D column: 10 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..680 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3007D10-3" /db_xref="taxon:10090" /clone="H3007D10" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 241 a 116 c 112 g 211 t ORIGIN 1 ggcttttaaa gtggaaaaca tttattaaca ttgaagctct catcatacaa ggccatataa 61 aaagtcttag cattctgatt atatttaagt atattttcta catagttaca gagttatata 121 attttgcttt tcataataca ttgcctcaat acattaggtc tattaaacaa aagcacttat 181 tttcaaatcc aatacttgaa caatttcctc tgcacatggt tcagcagggc taattagcat 241 aagatgctct ttatgaagag gtatgtgatc tcaatattaa cagttgctga aatttggtat 301 ttttatgcaa cattttttaa aatcacaaca caaaaggata ctgaaatatg gaaagtaagg 361 tccagagaca ttcccgtgga atcaaactca taacactata gtggttttga aaaccttaaa 421 gtatttgaag tctacactag acctttccta tgaggaaaaa ctacttggga atagaaagga 481 agaagacata agtttctctg cggtattatg aagaaaaatc ctaaactgcc tgttgccact 541 cattaatcat aacatagagg gactatcaga agagacttgt accaacccaa ccacactagg 601 caacttttat gaaagtgaga gttgttttag ctcatgctag atgaccatag cagacttcat 661 gtgtaagaca tttgcagact //