LOCUS BG062931 603 bp mRNA linear EST 12-MAY-2010 DEFINITION H3001A04-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3001A04 3', mRNA sequence. ACCESSION BG062931 VERSION BG062931.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 603) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG062931.1. Other_ESTs: H3001A04-5 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3001 row: A column: 04 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..603 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3001A04-3" /db_xref="taxon:10090" /clone="H3001A04" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 171 a 137 c 127 g 168 t ORIGIN 1 attggagtca gatttattgt ccatcatcat gttatacaaa aatctacaaa taataaattt 61 gtacagagaa aaaaagccca aaggaatagc gaatggaggt gtaacagcag taatttaaac 121 ttgcttcccc ccgatatatt aggatgacag ccatttttga agcataattc tgatgccaag 181 ggagcttttg ttcactggcc aaagcttgcc atttaaatta aggcccgcag tctctgagtt 241 ctactggttc ttgacaaagc ttttgaggtc ctcaagaaag gtgatatatt cctggtgctc 301 cagggctgtg ctgagctcca ccaactcatc cgcaaaagtg ttatccaccc ctcggtccgc 361 aaggaaatcc attaggtggt catacaaggc ccagtccagg gaatctgtgt tgagtgtata 421 gtttgtatcc ctccactcag agtcaccagt ggcctgaaag ctaacttcct tgatagagaa 481 aatatcactc tcggcctcat cttcgtgtcc aatctcatcc tcaggatagt gacagtccag 541 tacaagggtc ttcttgccat cagtcttggt aacttcaacc acaaagttgg gagttgatgt 601 cag //