LOCUS BC084553 1723 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 (glutamate binding), mRNA (cDNA
clone MGC:99687 IMAGE:6206624), complete cds.
ACCESSION BC084553
VERSION BC084553.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1723)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1723)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-OCT-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: h Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1723
/db_xref="H-InvDB:HIT000266062"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:99687 IMAGE:6206624"
/tissue_type="Pancreas, ductal carcinoma"
/clone_lib="NIH_MGC_110"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1723
/gene="GRINA"
/gene_synonym="HNRGW"
/gene_synonym="TMBIM3"
/db_xref="GeneID:2907"
/db_xref="HGNC:HGNC:4589"
/db_xref="MIM:138251"
CDS 16..1131
/gene="GRINA"
/gene_synonym="HNRGW"
/gene_synonym="TMBIM3"
/codon_start=1
/product="glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 (glutamate binding)"
/protein_id="AAH84553.1"
/db_xref="GeneID:2907"
/db_xref="HGNC:HGNC:4589"
/db_xref="MIM:138251"
/translation="MSHEKSFLVSGDNYPPPNPGYPGGPQPPMPPYAQPPYPGAPYPQ
PPFQPSPYGQPGYPHGPSPYPQGGYPQGPYPQGGYPQGPYPQEGYPQGPYPQGGYPQG
PYPQSPFPPNPYGQPQVFPGQDPDSPQHGNYQEEGPPSYYDNQDFPATNWDDKSIRQA
FIRKVFLVLTLQLSVTLSTVSVFTFVAEVKGFVRENVWTYYVSYAVFFISLIVLSCCG
DFRRKHPWNLVALSVLTASLSYMVGMIASFYNTEAVIMAVGITTAVCFTVVIFSMQTR
YDFTSCMGVLLVSMVVLFIFAILCIFIRNRILEIVYASLGALLFTCFLAVDTQLLLGN
KQLSLSPEEYVFAALNLYTDIINIFLYILTIIGRAKE"
BASE COUNT 324 a 610 c 430 g 359 t
ORIGIN
1 gcggaacccg aggccatgtc ccatgaaaag agttttttgg tgtctgggga caactatcct
61 ccccccaacc ctggatatcc gggggggccc cagccaccca tgccccccta tgctcagcct
121 ccctaccctg gggcccctta cccacagccc cctttccagc cctcccccta cggtcagcca
181 gggtaccccc atggccccag cccctacccc caagggggct acccacaggg tccctacccc
241 caagggggct acccacaggg cccctaccca caagagggct acccacaggg cccctacccc
301 caagggggct acccccaggg gccatatccc cagagcccct tcccccccaa cccctatgga
361 cagccacagg tcttcccagg acaagaccct gactcacccc agcatggaaa ctaccaggag
421 gagggtcccc catcctacta tgacaaccag gacttccctg ccaccaactg ggatgacaag
481 agcatccgac aggccttcat ccgcaaggtg ttcctagtgc tgaccttgca gctgtcggtg
541 accctgtcca cggtgtctgt gttcactttt gttgcggagg tgaagggctt tgtccgggag
601 aatgtctgga cctactatgt ctcctatgct gtcttcttca tctctctcat cgtcctcagc
661 tgttgtgggg acttccggcg aaagcacccc tggaaccttg ttgcactgtc ggtcctgacc
721 gccagcctgt cgtacatggt ggggatgatc gccagcttct acaacaccga ggcagtcatc
781 atggccgtgg gcatcaccac agccgtctgc ttcaccgtcg tcatcttctc catgcagacc
841 cgctacgact tcacctcatg catgggcgtg ctcctggtga gcatggtggt gctcttcatc
901 ttcgccattc tctgcatctt catccggaac cgcatcctgg agatcgtgta cgcctcactg
961 ggcgctctgc tcttcacctg cttcctcgca gtggacaccc agctgctgct ggggaacaag
1021 cagctgtccc tgagcccaga agagtatgtg tttgctgcgc tgaacctgta cacagacatc
1081 atcaacatct tcctgtacat cctcaccatc attggccgcg ccaaggagta gccgagctcc
1141 agctcgctgt gcccgctcag gtggcacggc tggcctggac cctgcccctg gcacggcagt
1201 gccagctgta cttcccctct ctcttgtccc caggcacagc ctagggaaaa ggatgcctct
1261 ctccaaccct cctgtatgta cactgcagat acttccattt ggacccgctg tggccacagc
1321 atggcccctt tagtcctccc gcccccgcca aggggcacca aggccacgtt tccgtgccac
1381 ctcctgtcta ctcattgttg catgagccct gtctgccagc ccaccccagg gactgggggc
1441 agcaccaggt cccggggaga gggattgagc caagaggtga gggtgcacgt cttccctcct
1501 gtcccagctc cccagcctgg cgtagagcac ccctcccctc ccccccaccc ccctggagtg
1561 ctgccctctg gggacatgcg gagtgggggt cttatccctg tgctgagccc tgagggcaga
1621 gaggatggca tgtttcaggg gagggggaag ccttcctctc aatttgttgt cagtgaaatt
1681 ccaataaatg ggatttgctc tctgcaaaaa aaaaaaaaaa aaa
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