LOCUS BC084548 965 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens PMS1 postmeiotic segregation increased 1 (S.
cerevisiae), mRNA (cDNA clone IMAGE:5443855), complete cds.
ACCESSION BC084548
VERSION BC084548.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 965)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 965)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-OCT-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: f Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 53729349
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..965
/db_xref="H-InvDB:HIT000266057"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5443855"
/tissue_type="Skin, melanoma, amelanotic"
/clone_lib="NIH_MGC_41"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..965
/gene="PMS1"
/gene_synonym="HNPCC3"
/gene_synonym="hPMS1"
/db_xref="GeneID:5378"
/db_xref="HGNC:HGNC:9121"
/db_xref="MIM:600258"
CDS 107..604
/gene="PMS1"
/gene_synonym="HNPCC3"
/gene_synonym="hPMS1"
/codon_start=1
/product="PMS1 protein"
/protein_id="AAH84548.1"
/db_xref="GeneID:5378"
/db_xref="HGNC:HGNC:9121"
/db_xref="MIM:600258"
/translation="MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKL
ENYGFDKIEVRDNGEGIKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICC
IAEVLITTRTAADNFSTQYVLDGSGHILSQKPSHLGQGSHSVTQAGLQWHHLGSLQPL
PPRLK"
BASE COUNT 264 a 203 c 220 g 278 t
ORIGIN
1 gtgcggggtt gggcctgcgc atcgggtgag acgctggctg cttgcggcta gtggatggta
61 attgcctgcc tcgcgctagc aggaagctgc tctgttaaaa gcgaaaatga aacaattgcc
121 tgcggcaaca gttcgactcc tttcaagttc tcagatcatc acttcggtgg tcagtgttgt
181 aaaagagctt attgaaaact ccttggatgc tggtgccaca agcgtagatg ttaaactgga
241 gaactatgga tttgataaaa ttgaggtgcg agataacggg gagggtatca aggctgttga
301 tgcacctgta atggcaatga agtactacac ctcaaaaata aatagtcatg aagatcttga
361 aaatttgaca acttacggtt ttcgtggaga agccttgggg tcaatttgtt gtatagctga
421 ggttttaatt acaacaagaa cggctgctga taattttagc acccagtatg ttttagatgg
481 cagtggccac atactttctc agaaaccttc acatcttggt caagggtctc actctgtcac
541 acaggctgga ctgcagtggc atcatcttgg ttcactgcaa cctctgcctc ccaggctcaa
601 gtgatcctcc cacctcagcc tcctcagtag ctgggactac aggtgcatac caccacaccc
661 ggctaatttt tgtattttta gtagagacag ggttttgctg tgttgcccag ctggcctcga
721 actcctgagc ccaagcgata cacctgcctt ggcctcccag agtgctgaga ttacagatgt
781 gagccactgt gttcagctga taagtgttta aatttctcta aaaactattt acttataaag
841 gtaaaaaaga tctctttagg cttcagtttc acatatctcc tttaatcttt ttttaataat
901 ttctagtgat gggatgatta agagactatt aaagctatta cctctttaaa aaaaaaaaaa
961 aaaaa
//