LOCUS BC082969 2291 bp mRNA linear HUM 12-OCT-2004
DEFINITION Homo sapiens kin of IRRE like (Drosophila), mRNA (cDNA clone
IMAGE:6585270), partial cds.
ACCESSION BC082969
VERSION BC082969.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2291)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2291)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (24-SEP-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: o Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34916054.
FEATURES Location/Qualifiers
source 1..2291
/db_xref="H-InvDB:HIT000266007"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6585270"
/tissue_type="Ovary, teratocarcinoma"
/clone_lib="NIH_MGC_109"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2291
/gene="KIRREL"
/gene_synonym="FLJ10845"
/gene_synonym="NEPH1"
/db_xref="GeneID:55243"
/db_xref="MIM:607428"
CDS <1..1341
/gene="KIRREL"
/gene_synonym="FLJ10845"
/gene_synonym="NEPH1"
/codon_start=1
/product="KIRREL protein"
/protein_id="AAH82969.1"
/db_xref="GeneID:55243"
/db_xref="MIM:607428"
/translation="VDPKPTTTDIGSDVTLTCVWVGNPPLTLTWTKKDSNMVLSNSNQ
LLLKSVTQADAGTYTCRAIVPRIGVAEREVPLYVNGPPIISSEAVQYAVRGDGGKVEC
FIGSTPPPDRIAWAWKENFLEVGTLERYTVERTNSGSGVLSTLTINNVMEADFQTHYN
CTAWNSFGPGTAIIQLEEREVLPVGIIAGATIGASILLIFFFIALVFFLYRRRKGSRK
DVTLRKLDIKVETVNREPLTMHSDREDDTASVSTATRVMKAIYSSFKDDVDLKQDLRC
DTIDTREEYEMKDPTNGYYNVRAHEDRPSSRAVLYADYRAPGPARFDGRPSSRLSHSS
GYAQLNTYSRGPASDYGPEPTPPGPAAPAGTDTTSQLSYENYEKFNSHPFPGAAGYPT
YRLGYPQAPPSGLERTPYEAYDPIGKYATATRFSYTSQHSDYGQRFQQRMQTHV"
BASE COUNT 491 a 706 c 630 g 464 t
ORIGIN
1 gttgacccca aacccacaac cacagacatt ggctctgatg tgacccttac ctgtgtctgg
61 gttgggaatc cccccctcac tctcacctgg accaaaaagg actcaaatat ggtcctgagt
121 aacagcaacc agctgctgct gaagtcggtg actcaggcag acgctggcac ctacacctgc
181 cgggccatcg tgcctcgaat cggagtggct gagcgggagg tgccgctcta tgtgaacggg
241 ccccccatca tctccagtga ggcagtgcag tatgctgtga ggggtgacgg tggcaaggtg
301 gagtgtttca ttgggagcac accaccccca gaccgcatag catgggcctg gaaggagaac
361 ttcttggagg tggggaccct ggaacgctat acagtggaga ggaccaactc aggcagtggg
421 gtgctatcca cgctcaccat caacaatgtc atggaggccg actttcagac tcactacaac
481 tgcaccgcct ggaacagctt cgggccaggc acagccatca tccagctgga agagcgagag
541 gtgttacctg tgggcatcat agctggggcc accatcggcg cgagcatcct gctcatcttc
601 ttcttcatcg ccttggtatt cttcctctac cggcgccgca aaggcagtcg caaagacgtg
661 accctgagga agctggatat caaggtggag acagtgaacc gagagccact tacgatgcat
721 tctgaccggg aggatgacac cgccagcgtc tccacagcaa cccgggtcat gaaggccatc
781 tactcgtcgt ttaaggatga tgtggatctg aagcaggacc tgcgctgcga caccatcgac
841 acccgggagg agtatgagat gaaggacccc accaatggct actacaacgt gcgtgcccat
901 gaagaccgcc cgtcttccag ggcagtgctc tatgctgact accgtgcccc tggccctgcc
961 cgcttcgacg gccgcccctc atcccgtctc tcccactcca gcggctatgc ccagctcaac
1021 acctatagcc ggggccctgc ctctgactat ggccctgagc ccacaccccc tggccctgct
1081 gccccagctg gcactgacac aaccagccag ctgtcctacg agaactatga gaagttcaac
1141 tcccatccct tccctggggc agctgggtac cccacctacc gactgggcta cccccaggcc
1201 ccaccctctg gcctggagcg gaccccatat gaggcgtatg accccattgg caagtacgcc
1261 acagccactc gattctccta cacctcccag cactcggact acggccagcg attccagcag
1321 cgcatgcaga ctcacgtgta ggggccagag cctggctggg gcatctctgc ggggcagagg
1381 agaaggcttt cacagctgtt ccctgatatt caggggcatt gctcattgct cccttctcgg
1441 accagccttc ttcctcccac catggcaggt ggggagcagg tctcccagaa acaccccgtc
1501 ccgaggatgg tgctctgtgc atgccccagc ctcctgggcc tgcccttccc tcttcttcgg
1561 gaggatgtgt ctcttctgac ctgcactctt gcctgaccct agaatgggga cagggaaagt
1621 gaaggttagg gaaagcagag gggggcactt tttagcattc cctttctatc ccacccctct
1681 gatctcccat aagtggaaat gggggtaccc agggatgggc aggctttggc ctagggacat
1741 gaagtatggg agtgggtggc tgtggcacag acaggtggaa aacgggatag cctggccagt
1801 ccctctgttg tctgcattcg tgccctgggt gcctctctcc ttcctcaggg tactgcagaa
1861 gggagcgaac agggtactgt tcgctcttgt ctacagaaca gccctggcac tgcattcaaa
1921 tccagtcttc attcagctgg gatcaaaatg ccagtcacct tggctaccca ctgtggacag
1981 ctgtctgtca gcatgcagag ggatccagga atccccccgg cagcacggcc cgctttcctt
2041 ctcctccatg ctgggccagc cagataagtc agggtcctgg tggagaaaga aaggctagga
2101 ccatgtcctc attgacccag atactgctgt gtgctgcaca gcagtgaacc aacactagag
2161 ggagacacac aagcctcctc tccccagtct gccccacttc ctggctttaa ctcttgagct
2221 ggtttgggga gtggtgaggt aggggtgggg gtgctgtagg ctctttttca aagaaaaaaa
2281 aaaaaaaaaa a
//