LOCUS BC081569 2871 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens pleckstrin homology domain interacting protein, mRNA
(cDNA clone IMAGE:4942836), complete cds.
ACCESSION BC081569
VERSION BC081569.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2871)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2871)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 166 Row: f Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38679895
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2871
/db_xref="H-InvDB:HIT000265943"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4942836"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2871
/gene="PHIP"
/gene_synonym="FLJ20705"
/gene_synonym="ndrp"
/gene_synonym="WDR11"
/db_xref="GeneID:55023"
CDS 198..2735
/gene="PHIP"
/gene_synonym="FLJ20705"
/gene_synonym="ndrp"
/gene_synonym="WDR11"
/codon_start=1
/product="PHIP protein"
/protein_id="AAH81569.1"
/db_xref="GeneID:55023"
/translation="MARKNKIYSINPKKQPWHKMELREQELMKIVGIKYEVGLPTLCC
LKLAFLDPDTGKLTGGSFTMKYHDMPDVIDFLVLRQQFDDAKYRRWNIGDRFRSVIDD
AWWFGTIESQEPLQPEYPDSLFQCYNVCWDNGDTEKMSPWDMELIPNNAVFPEELGTS
VPLTDGECRSLIYKPLDGEWGTNPRDEECERIVAGINQLMTLDIASAFVAPVDLQAYP
MYCTVVAYPTDLSTIKQRLENRFYRRVSSLMWEVRYIEHNTRTFNEPGSPIVKSAKFV
TDLLLHFIKDQTCYNIIPLYNSMKKKVLSDSEDEEKDADVPGTSTRKRKDHQPRRRLR
NRAQSYDIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRE
TLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYK
SALRFHKRNTITKRRKKRNRSSSVSSSAASSPERKKRILKPQLKSESSTSAFSTPTRS
IPPRHNAAQINGKTESSSVVRTRSNRVVVDPVVTEQPSTSSAAKTFITKANASAIPGK
TILENSVKHSKALNTLSSPGQSSFSHGTRNNSAKENMEKEKPVKRKMKSSVLPKASTL
SKSSAVIEQGDCKNNALVPGTIQVNGHGGQPSKLVKRGPGRKPKVEVNTNSGEIIHKK
RGRKPKKLQYAKPEDLEQNNVHPIRDEVLPSSTCNFLSETNNVKEDLLQKKNRGGRKP
KRKMKTQKLDADLLVPASVKVLRRSNRKKIDDPIDEEEEFEELKGSEPHMRTRNQGRR
TAFYNEDDSEEEQRQLLFEDTSLTFGTSSRGRVRKLTEKAKANLIGW"
BASE COUNT 1017 a 520 c 609 g 725 t
ORIGIN
1 gaaaaagatg gaccaatatc accaaagaaa aagaagccca aagaaagaaa acaaaagaga
61 ttggctgtgg gagaactaac tgaaaatggt ttgacattag aagaatggtt gccatcaacg
121 tggattacag ataccattcc ccgaagatgt ccatttgtgc cacagatggg tgatgaggac
181 atgaagccta tgtcgaaatg gcccggaaaa ataaaatata tagtatcaat cccaaaaaac
241 aaccatggca taaaatggag ctacgggaac aagaacttat gaaaatagtt ggcataaagt
301 atgaagtggg attacctacc ctttgctgcc ttaaacttgc ttttctagat cctgatactg
361 gtaaactgac tggcggatca tttaccatga aataccatga tatgcctgac gttatagatt
421 tcctagtctt gagacaacaa tttgatgatg caaaatacag gcgatggaat ataggtgacc
481 gcttcaggtc tgtcatagat gatgcctggt ggtttggaac aatcgaaagc caggaacctc
541 ttcaacctga gtaccctgat agtctgtttc aatgctacaa tgtttgctgg gacaatggag
601 atacagaaaa gatgagtcct tgggatatgg agcttatacc taataatgct gtatttcctg
661 aagaactagg taccagtgtt cctttaactg atggtgagtg cagatcacta atctataaac
721 ctcttgatgg agaatggggt accaatccca gggatgaaga atgtgaaaga attgtggcag
781 gaataaacca gttgatgaca ctagatattg cctcagcatt tgtggccccc gtggatctgc
841 aagcctatcc catgtattgc acagtagtgg catatccaac ggatctaagt acaattaaac
901 aaagactgga aaacaggttt tacaggcggg tttcttccct aatgtgggaa gttcgatata
961 tagagcataa tacacgaaca tttaatgagc ctggaagccc tattgtgaaa tctgctaaat
1021 tcgtgactga tcttcttcta cattttataa aggatcagac ttgttataac ataattccac
1081 tttataattc aatgaagaag aaagttttgt ctgattctga ggatgaagag aaggatgctg
1141 atgtgccagg aacttctact cgaaaaagga aggaccatca gcctagaaga agattacgta
1201 atagagccca gtcttacgat attcaagcat ggaagaaaca gtgtgaagaa ttgttaaatc
1261 tcatatttca atgtgaagat tcagagcctt tccgtcagcc ggtagatctc cttgaatatc
1321 cagactacag agacatcatt gacactccaa tggattttgc taccgttaga gaaactttag
1381 aggctgggaa ttatgagtca ccaatggagt tatgtaaaga tgtcagactt attttcagta
1441 attccaaagc atatacacca agcaaaagat caaggattta cagcatgagt ttgcgcttgt
1501 ctgcattctt tgaagaacac attagttcag ttttatcaga ttataaatct gctcttcgtt
1561 ttcataaaag aaataccata accaaaagga ggaagaaaag aaacagaagc agctctgttt
1621 ccagtagtgc tgcatcaagc cctgaaagga aaaaaaggat cttaaaaccc cagctaaaat
1681 cagaaagctc tacctctgca ttctctacac ctacacgatc aataccgcca agacacaatg
1741 ctgctcagat aaacggtaaa acagaatcta gttctgtggt tcgaaccaga agcaaccgag
1801 tggttgtaga tccagttgtc actgagcaac catctacttc ttcagctgca aagactttta
1861 ttacaaaagc taatgcatct gcaataccag ggaaaacaat actagagaat tctgtgaaac
1921 attccaaagc tttgaatact ctttccagtc ctggtcaatc cagttttagt catggcacta
1981 ggaataattc tgcaaaagaa aacatggaaa aggaaaagcc agtcaaacgt aaaatgaagt
2041 catctgtact cccaaaggcg tccactcttt caaagtcatc agctgtcatt gagcaaggag
2101 attgtaagaa caacgctctt gtaccaggaa ccattcaagt aaatggccat ggaggacagc
2161 catcaaaact tgtgaagagg ggacctggaa ggaaacctaa agtagaagtt aataccaata
2221 gtggtgaaat tatacacaag aaaaggggta gaaagcccaa aaagctacag tatgcaaagc
2281 cagaagattt agagcaaaat aatgtgcatc ccatcagaga tgaagtactt ccttcttcaa
2341 catgcaattt tctttctgaa actaataatg taaaggaaga tttgttacag aaaaagaatc
2401 gtggaggtag gaagcccaaa aggaagatga agacacaaaa attagatgca gatctcctag
2461 tccctgcaag tgtcaaagtg ttaaggagaa gtaaccgaaa aaagatagat gatcctatag
2521 atgaggaaga agagtttgaa gaactcaaag gctctgaacc ccacatgaga actagaaatc
2581 aaggtcgaag gacagctttc tataatgagg atgactctga agaggagcaa aggcagctgt
2641 tgttcgaaga cacctcttta acttttggaa cttctagtag aggacgagtc cgaaagttga
2701 ctgaaaaagc aaaagctaat ttaattggtt ggtaacttgt accaaaatat tttacttcaa
2761 aatctataaa gcaggtacag ttaaggaata agtagaacta aggcttctgc ttccttgctg
2821 ctgtggtgga gtagggaatg ttatgatttg atttgcaaaa aaaaaaaaaa a
//