LOCUS BC080627 1886 bp mRNA linear HUM 15-SEP-2004
DEFINITION Homo sapiens chromodomain helicase DNA binding protein 7, mRNA
(cDNA clone IMAGE:6340273), partial cds.
ACCESSION BC080627
VERSION BC080627.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1886)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1886)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: k Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction.
FEATURES Location/Qualifiers
source 1..1886
/db_xref="H-InvDB:HIT000265891"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6340273"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_47"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..>1886
/gene="CHD7"
/gene_synonym="FLJ20357"
/gene_synonym="FLJ20361"
/gene_synonym="KIAA1416"
/db_xref="GeneID:55636"
/db_xref="MIM:608892"
CDS <1..>1886
/gene="CHD7"
/gene_synonym="FLJ20357"
/gene_synonym="FLJ20361"
/gene_synonym="KIAA1416"
/codon_start=2
/product="CHD7 protein"
/protein_id="AAH80627.1"
/db_xref="GeneID:55636"
/db_xref="MIM:608892"
/translation="KHLSEVKHRQAPELWFGGAVCWKKMADPGMMSLFGEDGNIFSEG
LEGLGECGYPENPVNPMGQQMPIDQGFASLQPSLHHPSTNQNQTKLTHFDHYNQYEQQ
KMHLMDQPNRMMSNTPGNGLASPHSQYHTPPVPQVPHGGSGGGQMGVYPGMQNERHGQ
SFVDSSSMWGPRAVQVPDQIRAPYQQQQPQPQPPQPAPSGPPAQGHPQHMQQMGSYMA
RGDFSMQQHGQPQQRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQQSPSMAPSLRHS
VQQFHHHPSTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTVPSPTINNSGQY
SRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQPIH
PSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRPGSAGIPMEVGS
YPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQSRPFIGMSSAPRELTGHMRPNGCPGVG
LGDPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQPHPGLHHQSSPPHPHHQPWAQLHP
SPQNTPQKVPVHQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKK
KKKK"
BASE COUNT 519 a 566 c 422 g 379 t
ORIGIN
1 caaacacctc agtgaagtga agcacaggca agctcctgag ctgtggtttg gaggagccgt
61 gtgttggaag aagatggcag atccaggaat gatgagtctt tttggcgagg atgggaatat
121 tttcagtgaa ggtcttgaag gcctcggaga atgtggttac ccggaaaatc cagtaaatcc
181 tatgggtcag caaatgccaa tagaccaagg ctttgcctct ttacagccat cccttcatca
241 tccttcaact aatcaaaatc aaacaaagct gacacatttt gatcactata atcagtatga
301 acaacaaaag atgcatctga tggatcagcc gaacagaatg atgagcaaca cccctgggaa
361 cggactcgcg tctccgcact cgcagtatca cacccctccc gttcctcagg tgccccatgg
421 tggcagtggt ggcggtcaga tgggtgtcta ccctggcatg cagaatgaga ggcatgggca
481 atcctttgtg gacagcagct ccatgtgggg ccccagggct gttcaggtac cagaccagat
541 acgagccccc taccagcagc agcagccaca gccgcagcca ccgcagccgg ctccgtcggg
601 gccccctgca cagggccacc ctcagcacat gcagcagatg ggcagctata tggcacgtgg
661 ggatttttcc atgcagcagc atggtcagcc acagcagagg atgagccagt tttcccaagg
721 ccaagagggc ctcaatcagg gaaatccttt tattgccacc tcaggacctg gccacttgtc
781 ccacgtgccc cagcagagtc ccagcatggc accttccttg cgtcactcgg tgcagcagtt
841 ccatcaccac ccctctactg ctctccatgg agaatccgtt gcccacagtc ccagattctc
901 cccgaatcct ccccaacaag gggctgttag gccgcaaacc cttaacttta gttctcggag
961 ccagacagtc ccctctccta ctataaacaa ctcagggcag tattctcgat atccttacag
1021 taacctaaat cagggattag ttaacaatac agggatgaat caaaatttag gccttacaaa
1081 taatactcca atgaatcagt ccgtaccaag ataccccaat gctgtaggat tcccatcaaa
1141 cagtggtcaa ggactaatgc accagcagcc catccacccc agtggctcac ttaaccaaat
1201 gaacacacaa actatgcatc cttcacagcc tcagggaact tatgcctctc cacctcccat
1261 gtcacccatg aaagcaatga gtaatccagc aggcactcct cctccacaag tcaggccggg
1321 aagtgctggg ataccaatgg aagttggcag ttatccaaat atgccccatc ctcagccatc
1381 tcaccagccc cctggtgcca tgggaatcgg acagaggaat atgggcccca gaaacatgca
1441 gcagtctcgt ccatttatag gcatgtcctc ggcaccaagg gaattgactg gccacatgag
1501 gccaaatggt tgtcctggtg ttggccttgg agacccacaa gcaatccagg aacgactgat
1561 acctggccaa caacatcctg gtcaacagcc atcttttcag cagttgccaa cctgtcctcc
1621 actgcagcct cacccgggct tgcaccacca gtcttcacct ccacaccctc atcaccagcc
1681 ttgggcacag ctccacccat caccccagaa caccccgcag aaagtgcctg tgcatcagca
1741 ttccccgtcg gagccctttc tagagaaacc agtgccggat atgactcagg ttagtggacc
1801 gaatgctcag ctagtgaaga gtgatgatta cctgccatca atagaacagc agccacaaca
1861 aaaaaaaaaa aaaaaaaaaa aaaaaa
//