LOCUS BC080588 982 bp mRNA linear HUM 24-JAN-2005
DEFINITION Homo sapiens sterile alpha motif domain containing 1, mRNA (cDNA
clone IMAGE:3542295), partial cds.
ACCESSION BC080588
VERSION BC080588.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 982)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 982)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: a Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction.
FEATURES Location/Qualifiers
source 1..982
/db_xref="H-InvDB:HIT000265856"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3542295"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..982
/gene="SAMD1"
/db_xref="GeneID:90378"
CDS <1..711
/gene="SAMD1"
/codon_start=1
/product="SAMD1 protein"
/protein_id="AAH80588.1"
/db_xref="GeneID:90378"
/translation="PGRAPPAASARPSRSKRGGEERVLEKEEEEDDDEDEDEEDDVSE
GSEVPESDRPAGAQHHQLNGERGPQSAKERVKEWTPCGPHQGQDEGRGPAPGSGTRQV
FSMAAMNKEGGTASVATGPDSPSPVPLPPGKPALPGADGTPFGCPPGRKEKPSDPVEW
TVMDVVEYFTEAGFPEQATAFQEQEIDGKSLLLMQRTDVLTGLSIRLGPALKIYEHHI
KVLQQGHFEDDDPDGFLG"
BASE COUNT 226 a 308 c 285 g 163 t
ORIGIN
1 cccggacggg cgccgccggc cgccagcgcc cgcccgtctc gcagcaagag aggtggagaa
61 gagcgagtac ttgagaaaga agaggaagaa gatgatgatg aagatgaaga tgaggaagat
121 gatgtgtcag agggctctga agtgcccgag agtgaccgtc ctgcaggtgc ccagcaccac
181 cagcttaacg gcgagcgggg acctcagagt gccaaggaga gggtcaagga gtggaccccc
241 tgcggaccgc accagggcca ggatgaaggg cgggggccag ccccgggcag cggcacccgc
301 caggtgttct ccatggcagc catgaacaag gaagggggaa cagcttctgt tgccaccggg
361 ccagactccc cgtcccccgt gcctttgccc ccaggcaaac cagccctacc tggggccgac
421 gggaccccct ttggctgtcc tcccgggcgc aaagagaagc catctgatcc cgtcgagtgg
481 accgtgatgg atgtcgtcga atattttact gaggctggat tcccggagca ggcgacagct
541 ttccaagagc aggaaattga tggcaaatct ttgctgctca tgcagcgcac agatgtgctc
601 accggcctgt ccatccgcct cgggccagcc ctgaaaatct acgagcacca catcaaggtg
661 cttcagcaag gccactttga ggatgatgac cccgatggct tcttaggctg agcgcccagc
721 ctcacccctg ccccagccca ttccggcccc catctcaccc aagatccccc agagtccagg
781 agctggacgg ggacaccctc agccctcata acagattcca aggagagggc accctcttgt
841 ccttatcttt gccccttgtg tctgtctcac acacatctgc tcctcagcac gtcggtgtgg
901 ggaggggatt gctccttaaa ccccaggtgg ctgaccctcc ccacccagtc caggacattt
961 taggaaaaaa aaaaaaaaaa aa
//