LOCUS BC080584 1913 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens PDZ domain containing 4, mRNA (cDNA clone
IMAGE:3503412), partial cds.
ACCESSION BC080584
VERSION BC080584.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1913)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1913)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: a Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1913
/db_xref="H-InvDB:HIT000265852"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3503412"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1913
/gene="PDZK4"
/gene_synonym="FLJ34125"
/gene_synonym="KIAA1444"
/gene_synonym="LU1"
/gene_synonym="PDZD4"
/gene_synonym="PDZRN4L"
/db_xref="GeneID:57595"
CDS <1..710
/gene="PDZK4"
/gene_synonym="FLJ34125"
/gene_synonym="KIAA1444"
/gene_synonym="LU1"
/gene_synonym="PDZD4"
/gene_synonym="PDZRN4L"
/codon_start=3
/product="PDZK4 protein"
/protein_id="AAH80584.1"
/db_xref="GeneID:57595"
/translation="EAGRRQHAEERGRRNPKTGLTLERVGPESSPYLSRRHRGQGQEG
EHYHSCVQLAPTRGLEELGHGPLSLAGGPRVGGVAAAATEAPRMEWKVKVRSDGTRYV
AKRPVRDRLLKARALKIREERSGMTTDDDAVSEMKMGRYWSKEERKQHLIRAREQRKR
REFMMQSRLECLREQQNGDSKPELNIIALSHRKTMKKRNKKILDNWITIQEMLAHGAR
SADGKRVYNPLLSVTTV"
BASE COUNT 388 a 551 c 650 g 324 t
ORIGIN
1 ctgaggccgg ccggaggcag cacgcggagg agcgcggccg ccgcaacccc aagacggggt
61 tgaccctgga gcgtgtgggc cctgaaagca gcccttacct ctcgcggcgc caccgcggcc
121 agggccagga gggcgagcac taccacagct gcgtgcagct ggccccgacg cgaggcctgg
181 aggagctggg ccacggcccc ctgagcttgg ccggtggccc tcgggtgggc ggggtggcgg
241 ccgcggccac tgaagcaccg cgcatggagt ggaaagtgaa ggtgcgcagc gacggaaccc
301 gctacgtggc caagcggccc gtgcgagatc ggctgctgaa agcccgtgcc ctgaagatcc
361 gggaggagcg cagcggtatg acgaccgacg acgacgcggt gagcgagatg aagatgggcc
421 gctactggag caaggaggag cggaagcagc acctgatccg ggcccgtgag cagcggaagc
481 ggcgcgagtt catgatgcag agccggctgg agtgcctgcg ggagcagcag aatggcgaca
541 gcaagcccga gctcaacatc attgccctga gccaccgcaa aaccatgaag aagcggaaca
601 agaagatcct ggacaactgg atcaccatcc aggagatgct ggcccacggc gcgcgctccg
661 ccgatggcaa gcgggtctac aaccctcttc tctcagtcac caccgtgtga gctgcccggg
721 cgggtacacg gcccaggccc agggaacccc ctggggcccc ggccctcact ctcctataga
781 gattgtgtgt gtgtgtgtgt gcgcgcgcgc gtgctcgctg tgcgcacgca cacatctcct
841 cgtctgggtg tgcgcacagg gctttgttag cagagagaag cccctgagga gaagggacgc
901 ttttcttcct tctgcccaag taaagtgacc atgccagtgg ccagcactgg gggcacacct
961 gtgatgggca ccccttcagc tgtgcgtgtg cattccccat cccccatgct cttgcgtgtg
1021 cttgcacgtg cacgcacaca cacacccagt gctctctcca cccgacccgt gtacttgcag
1081 acagggaagc tgagctgaaa ggagcacaag agagtgtccg gcttcgctgc tgagcgcggc
1141 ctctccccgc cgctgcgcac tgcagttatt tgtagacaaa ggcacccctg atttttgtgg
1201 tttttctccc tttctgtgct tgccaatagt tgttttgttt tgtggacctg ccctgggggc
1261 tggcagctcc ttcaggcagc ctggcagaag tggaactccc ctctccactg atggctggga
1321 agggagttgg ggaggaagag tgggagggag ggctggggat ggatgggagg gaaggggagg
1381 gaaaggtggg aggaatggga agcagctgtt ctggtggctt ccactctgag gtgtgggaac
1441 ggggagcctc tggggggcac ctgtttcccc agtgactcag agagagcaag actgcaggaa
1501 cggaggggtc ctgcagggtg tccaccaaga agtcacagag cccgttctgc gccccacacc
1561 atctggagca ggggcttctc ttctgagtga actgaggaag gtgcttagat ggtgagggct
1621 ctagaaacca agccccatga gcagcagtgg aagacctcgg gccatgcggc ctggggagga
1681 cttggtggcg atccgcaacc tggaccccag tgagaggcgg tgggctgact gggaaggaga
1741 ggcccccaac ctcctcagga tttgcacgtg tgaactaggc tgcctgtggg gtgcccctta
1801 ggcttggaga gccccagatt ggaggcagac agactgcacc accccttccc cccctgcatc
1861 tcaagaataa agcaagctgc ctttgtactt ggttgaaaaa aaaaaaaaaa aaa
//