LOCUS BC080554 2197 bp mRNA linear HUM 28-SEP-2006
DEFINITION Homo sapiens splicing factor, arginine/serine-rich 16, mRNA (cDNA
clone MGC:99647 IMAGE:6258057), complete cds.
ACCESSION BC080554
VERSION BC080554.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2197)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2197)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: i Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5902129.
FEATURES Location/Qualifiers
source 1..2197
/db_xref="H-InvDB:HIT000265823"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:99647 IMAGE:6258057"
/tissue_type="Skin, melanoma, melanotic"
/clone_lib="NIH_MGC_112"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2197
/gene="SFRS16"
/gene_synonym="CLASP"
/gene_synonym="SWAP2"
/db_xref="GeneID:11129"
/db_xref="HGNC:HGNC:17731"
CDS 84..2063
/gene="SFRS16"
/gene_synonym="CLASP"
/gene_synonym="SWAP2"
/codon_start=1
/product="splicing factor, arginine/serine-rich 16"
/protein_id="AAH80554.1"
/db_xref="GeneID:11129"
/db_xref="HGNC:HGNC:17731"
/translation="MVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALA
AESPVNMMPWQGDTNNMIDRFDVRAHLDHIPDYTPPLLTTISPEQESDERKCNYERYR
GLVQNDFAGISEEQCLYQIYIDELYGGLQRPSEDEKKKLAEKKASIGYTYEDSTVAEV
EKAAEKPEEEESAAEEESNSDEDEVIPDIDVEVDVDELNQEQVADLNKQATTYGMADG
DFVRMLRKDKEEAEAIKHAKALEEEKAMYSGRRSRRQRREFREKRLRGRKISPPSYAR
RDSPTYDPYKRSPSESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAAS
GVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGG
YYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGP
RRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRS
RSRSRSQSPSPSPAREKLTRPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQEKLKLR
MQKALNRQFKADKKAAQEKMIQQEHERQEREDELRAMARKIRMKERERREKEREEWER
QYSRQSRSPSPRYSREYSSSRRRSRSRSRSPHYRH"
BASE COUNT 524 a 692 c 679 g 302 t
ORIGIN
1 gaccagccgg ttgaggcccc aggcttggcc tcaccacaat gtggcacgag gctcggaagc
61 atgagcggaa gcttcgaggc atgatggtcg actacaagaa gagggcggag cggagacggg
121 agtattatga aaagatcaag aaggacccag cccagttcct gcaggtacat ggccgagctt
181 gcaaggtgca cctggattct gcagtcgccc tggccgctga gagccctgtt aatatgatgc
241 cctggcaggg ggacaccaac aacatgattg accgattcga tgtccgtgcc cacctggacc
301 acatccccga ctacaccccc cctctgctca ccaccatctc cccagaacag gagtcggacg
361 aacggaagtg taactacgag cgctacagag gcctggtgca gaacgacttt gccggcatct
421 cagaggagca gtgcctgtac cagatctaca ttgatgagtt gtacggaggc ctccagagac
481 ccagcgaaga tgagaagaag aagctggcag agaagaaggc ttccatcggt tatacctacg
541 aggacagcac ggtggccgag gtagagaagg cggcagaaaa gccagaggag gaggagtcag
601 cggccgagga ggagagcaac tcggacgaag atgaggtcat ccccgacatc gacgtggagg
661 tggacgtgga tgaattgaac caggagcagg tggcagatct caacaaacag gccacgactt
721 atggcatggc cgacggtgac ttcgtcagga tgctccggaa agacaaggag gaggcagagg
781 ccatcaagca tgccaaggct cttgaggagg agaaggccat gtactcggga cgccgctctc
841 gacgccagcg gagagagttt cgggagaagc ggctgagggg tcgcaagatc agcccaccca
901 gctatgcccg ccgagacagc cccacctatg acccctataa gcggtcaccc tcggagtcca
961 gctcagagtc ccgctcccgc tcccgctccc cgaccccggg ccgcgaggag aagatcacgt
1021 tcatcaccag ttttgggggc agcgatgagg aggcagccgc agccgctgct gccgcagcag
1081 catcaggagt caccacaggg aagccccccg cacctcccca gcctggcggc cccgccccgg
1141 gacgtaatgc cagcgcccgc cgccgctcct cctcctcctc ctcctcctct tctgcctcga
1201 ggacctccag ctcccgctcc agctctcgct ccagctcccg ctctcgccgt ggtgggggct
1261 actaccgttc cggccgccac gcccgctccc ggtcccgctc ctggtcccgc tcccgctccc
1321 gctcccggcg ctattcccgg tcccgtagcc gtggccggcg gcactcaggt gggggctccc
1381 gagacggaca ccggtactcc cgctcgcccg cccggcgtgg tggttacggg ccccggcgca
1441 gaagcaggag ccgctcccac tcaggggacc gctacaggcg gggcggccgg ggcctcaggc
1501 accacagcag tagccgcagc cgcagcagct ggtccctcag cccgtcccgc agtcgcagcc
1561 tgactcgcag ccgcagccat agccccagcc ccagccagag ccgcagccgc agccgcagcc
1621 gcagccagag cccctcgcca tcacccgcaa gagagaagct gaccaggccg gccgcgtccc
1681 ctgctgtggg cgagaagctg aaaaagaccg aacctgccgc tggtaaagag acaggagctg
1741 ccaaacccaa gctgacgcct caggagaagc tgaaactgag gatgcagaag gcgctgaaca
1801 ggcagttcaa ggcggataag aaggcggcac aagaaaagat gatccagcag gagcatgagc
1861 ggcaggagcg ggaagacgag cttcgagcca tggcccgcaa gatccgcatg aaggagcggg
1921 aacgccgaga gaaggagaga gaagagtggg aacgccagta cagccggcag agccgctcac
1981 cctccccccg atacagtcga gaatacagct cttctcgaag gcgctcaagg tcccgatccc
2041 gaagccccca ttaccgacat taggcagaag aggggggggt ggggaggaca agggggtggg
2101 taaggggctc aagctgtgat gctgctggtt ttatctctag tgaaataaag tcaaaagtta
2161 tttaattcca aaaaaaaaaa aaaaaaaaaa aaaaaaa
//