LOCUS BC080540 1701 bp mRNA linear HUM 06-DEC-2007
DEFINITION Homo sapiens chromosome 16 open reading frame 84, mRNA (cDNA clone
IMAGE:5458809), partial cds.
ACCESSION BC080540
VERSION BC080540.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1701)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1701)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: g Column: 1.
FEATURES Location/Qualifiers
source 1..1701
/db_xref="H-InvDB:HIT000265809"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5458809"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_47"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1701
/gene="C16orf84"
/db_xref="GeneID:348180"
/db_xref="HGNC:HGNC:28005"
CDS <1..1524
/gene="C16orf84"
/codon_start=1
/product="C16orf84 protein"
/protein_id="AAH80540.1"
/db_xref="GeneID:348180"
/db_xref="HGNC:HGNC:28005"
/translation="GEPAPEEPPPAPRPSREQKCVKCKEAQPVVVIRAGDAFCRDCFK
AFYVHKFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGV
IFVDEGAACGQSLEERSKTLAEVKPILQATGFPWHVVALEEVFSLPPSVLWCSAQELV
GSEGAYKAAVDSFLQQQHVLGAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALS
QLFCSVRTLTAKEELLQTLRTHLILHVARAHGYSKVMTGDSCTRLAIKLMTNLALGRG
AFLAWDTGFSDEWHGDVVVVRPMRDHTLKEVAFYNRLFSVPSVFTPAVDTKAPEKASI
HRLMEAFILRLQTQFPSTVSTVYRTSEKLVKGPRDGPAAGDSGPRCLLCMCALDVDAA
DSATAFGAQTSSRLSRMQSPIPLTETRTPPGPCCSPGVGWAQRCGQGACRREDPQACI
EEQLCYSCRVNMKDLPSLDPLPPYILAEAQLRTQRAWGLQEIRDCLIEDSDDEAGQS"
BASE COUNT 352 a 513 c 533 g 303 t
ORIGIN
1 ggggagccgg cgcctgagga gccgcccccg gcgccgcggc ccagccgtga gcagaagtgt
61 gtgaagtgca aggaagcgca gcccgttgtg gtgatacgag ccggagatgc cttctgcagg
121 gactgtttca aggccttcta cgtccacaag ttcagagcca tgctgggcaa gaaccggctc
181 atctttccag gcgagaaggt gctcttggcg tggtctgggg ggccttcgtc cagctccatg
241 gtctggcagg ttcttgaggg cctgagccaa gattctgcca aaagactgcg ctttgtggca
301 ggagtcatct ttgttgacga gggagcagcc tgtggccaga gcctagagga gagatcaaag
361 accctggccg aagtgaagcc cattctgcaa gcaactgggt tcccatggca tgtggtggcc
421 ttagaggagg tgttcagcct gccaccgtcg gtgctttggt gctctgccca ggagctggtg
481 ggatccgagg gggcctacaa ggcggccgtg gacagcttcc tccagcagca gcatgtgctg
541 ggggccgggg gtggtcctgg cccgactcaa ggggaggaac agccacccca gcccccgctg
601 gacccccaga acctggcaag accgcctgcc cctgcccaga ctgaggctct ttcccaactg
661 ttctgctcag tgaggacact gactgccaag gaggagcttc tgcagaccct gcggacccac
721 ctgatcctcc acgtggcccg agcccacggc tactccaagg tcatgactgg ggacagctgc
781 acacgcttgg ctatcaagct catgaccaac ctggcgctgg gtcgaggggc cttcctggcc
841 tgggatacgg gcttctcgga tgagtggcac ggggacgtgg tggtggtgcg gcccatgcgg
901 gaccacaccc tgaaggaggt cgctttctac aaccgcctgt tctccgttcc ttctgtcttc
961 acaccagccg tcgacaccaa ggcccctgaa aaggccagca tccaccggct gatggaggcc
1021 ttcatcctca ggctgcagac ccagttcccc tccactgtca gcactgtgta caggacaagt
1081 gagaagctgg tgaagggccc ccgggatggc cctgctgctg gcgactccgg cccccgctgc
1141 ctcctctgca tgtgtgccct ggacgtcgac gccgctgaca gtgccacggc ttttggggct
1201 cagacctcct cgcgtctctc ccggatgcag tcacccatcc ccctgactga gacccggaca
1261 cccccggggc cctgctgttc tccaggggtg ggctgggccc agcgctgcgg ccagggggcc
1321 tgcaggaggg aggaccccca agcctgcatt gaggagcagc tgtgctacag ctgccgcgtg
1381 aacatgaagg acttgccctc actggacccc ctgccgccgt acatcctggc tgaggcccag
1441 ctccgcacac agagggcctg gggcttgcag gagatccggg actgtctgat tgaggacagt
1501 gacgacgagg cgggccagag ctgagcgtga ggacgtgctt gccgggacag caggcagtgg
1561 ccacctggta caccacactg gagccggaag gcaaggacgg gggactggcc tctgattgtc
1621 catttgtata aataaaacat tttttaatta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1681 aaaaaaaaaa aaaaaaaaaa a
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