LOCUS BC080516 1095 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens small nuclear ribonucleoprotein polypeptides B and B1,
mRNA (cDNA clone MGC:99669 IMAGE:2822685), complete cds.
ACCESSION BC080516
VERSION BC080516.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1095)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1095)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: a Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38149990.
FEATURES Location/Qualifiers
source 1..1095
/db_xref="H-InvDB:HIT000265788"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:99669 IMAGE:2822685"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1095
/gene="SNRPB"
/gene_synonym="COD"
/gene_synonym="SmB/SmB'"
/gene_synonym="snRNP-B"
/db_xref="GeneID:6628"
/db_xref="HGNC:HGNC:11153"
/db_xref="MIM:182282"
CDS 82..777
/gene="SNRPB"
/gene_synonym="COD"
/gene_synonym="SmB/SmB'"
/gene_synonym="snRNP-B"
/codon_start=1
/product="small nuclear ribonucleoprotein polypeptides B
and B1"
/protein_id="AAH80516.1"
/db_xref="GeneID:6628"
/db_xref="HGNC:HGNC:11153"
/db_xref="MIM:182282"
/translation="MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCD
CDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG
GPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATAS
IAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPP
GMRPPPPGMRGLL"
BASE COUNT 252 a 308 c 310 g 225 t
ORIGIN
1 gcgggaaatc ggctgtggga gagaggctag gcctctgagg aggcgaatcc ggcgggtatc
61 agagccatca gaaccgccac catgacggtg ggcaagagca gcaagatgct gcagcatatt
121 gattacagga tgaggtgcat cctgcaggac ggccggatct tcattggcac cttcaaggct
181 tttgacaagc acatgaattt gatcctctgt gactgtgatg agttcagaaa gatcaagcca
241 aagaactcca aacaagcaga aagggaagag aagcgagtcc tcggtctggt gctgctgcga
301 ggggagaatc tggtctcaat gacagtagag ggacctcctc ccaaagatac tggtattgct
361 cgagttccac ttgctggagc tgccgggggc ccagggatcg gcagggctgc tggcagagga
421 atcccagctg gggttcccat gccccaggct cctgcaggac ttgctgggcc agtccgtggg
481 gttggcgggc catcccaaca ggtgatgacc ccacaaggaa gaggtactgt tgcagccgct
541 gcagctgctg ccacagccag tattgccggg gctccaaccc agtacccacc tggccgtggg
601 ggtcctcccc cacctatggg ccgaggagca ccccctccag gcatgatggg cccacctcct
661 ggtatgagac ctcctatggg tcccccaatg gggatccccc ctggaagagg gactccaatg
721 ggcatgcccc ctccgggaat gcggcctcct ccccctggga tgcgaggcct tctttgaccc
781 ttggccacag agtatggaag tagctccgca gaggcgtggg ctcgattcct cagggccacg
841 ttaccacaga cctgtttgtt tcttatgctg ttgttcgtgg agtctcatgg gattgtctgg
901 tttcccttac agggccccct cccccgggaa tgcgcccacc aaggccctag actcatcttg
961 gccctcctca gctccctgcc tgtttcccgt aaggctgtac atagtccttt tatctccttg
1021 tggcctatga aactggttta taataaactc ttaagagaac attaaaaaaa aaaaaaaaaa
1081 aaaaaaaaaa aaaaa
//