LOCUS BC080187 3930 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens leiomodin 1 (smooth muscle), mRNA (cDNA clone
MGC:87977 IMAGE:6177902), complete cds.
ACCESSION BC080187
VERSION BC080187.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3930)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3930)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: l Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6912323.
FEATURES Location/Qualifiers
source 1..3930
/db_xref="H-InvDB:HIT000265776"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87977 IMAGE:6177902"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3930
/gene="LMOD1"
/gene_synonym="1D"
/gene_synonym="64kD"
/gene_synonym="D1"
/gene_synonym="SM-LMOD"
/db_xref="GeneID:25802"
/db_xref="HGNC:HGNC:6647"
/db_xref="MIM:602715"
CDS 198..2000
/gene="LMOD1"
/gene_synonym="1D"
/gene_synonym="64kD"
/gene_synonym="D1"
/gene_synonym="SM-LMOD"
/codon_start=1
/product="leiomodin 1 (smooth muscle)"
/protein_id="AAH80187.1"
/db_xref="GeneID:25802"
/db_xref="HGNC:HGNC:6647"
/db_xref="MIM:602715"
/translation="MSRVAKYRRQVSEDPDIDSLLETLSPEEMEELEKELDVVDPDGS
VPVGLRQRNQTEKQSTGVYNREAMLNFCEKETKKLMQREMSMDESKQVETKTDAKNGE
ERGRDASKKALGPRRDSDLGKEPKRGGLKKSFSRDRDEAGGKSGEKPKEEKIIRGIDK
GRVRAAVDKKEAGKDGRGEERAVATKKEEEKKGSDRNTGLSRDKDKKREEMKEVAKKE
DDEKVKGERRNTDTRKEGEKMKRAGGNTDMKKEDEKVKRGTGNTDTKKDDEKVKKNEP
LHEKEAKDDSKTKTPEKQTPSGPTKPSEGPAKVEEEAAPSIFDEPLERVKNNDPEMTE
VNVNNSDCITNEILVRFTEALEFNTVVKLFALANTRADDHVAFAIAIMLKANKTITSL
NLDSNHITGKGILAIFRALLQNNTLTELRFHNQRHICGGKTEMEIAKLLKENTTLLKL
GYHFELAGPRMTVTNLLSRNMDKQRQKRLQEQRQAQEAKGEKKDLLEVPKAGAVAKGS
PKPSPQPSPKPSPKNSPKKGGAPAAPPPPPPPLAPPLIMENLKNSLSPATQRKMGDKV
LPAQEKNSRDQLLAAIRSSNLKQLKKVEVPKLLQ"
BASE COUNT 1065 a 1049 c 1105 g 711 t
ORIGIN
1 ctgggctgca gggaggctgc tgcgtccagt gaacacttca gcacctgtag cacagaaggg
61 ccaaggagct gcagtcctcg accagcagga ggtttgctcc tcagcccact cgctgcatcc
121 agatcagctc acccctctcc cttccctgcc caccaggact ctgatagccc ctggcagcca
181 cagcccattt tgccaagatg tctagagtag ccaaatatcg ccggcaggtg agtgaagacc
241 ccgacatcga cagcctgctg gagaccctgt ctcccgagga gatggaggag ctggagaagg
301 agctggacgt ggtggaccca gacgggagtg ttcccgtggg gctgcggcag agaaaccaga
361 cggagaaaca gtccacgggt gtgtacaacc gggaggccat gctcaacttc tgtgaaaagg
421 agaccaagaa acttatgcag agggagatgt ccatggatga aagcaagcaa gtggagacca
481 agacagatgc caagaatgga gaggaaaggg gcagagatgc cagcaaaaaa gccctgggcc
541 ccagacggga ctcagatctg gggaaggagc caaagagggg tggtttaaag aaaagcttct
601 ctagagacag agatgaagct ggtggcaaga gtggcgagaa gcccaaggag gagaagatca
661 tccggggcat tgacaagggc cgggtcaggg ctgcagtgga taagaaggag gcagggaagg
721 atgggagagg agaggagagg gcagtggcca ccaagaagga agaggagaag aaagggagtg
781 acaggaacac aggcttgagc agggacaagg ataaaaagag agaggagatg aaggaggtgg
841 ccaagaaaga ggatgatgag aaggtaaaag gggagcgtag gaacacagac accagaaaag
901 agggtgagaa gatgaaaaga gcaggtggga acacagacat gaaaaaggag gatgagaagg
961 taaaaagagg aactgggaac acagacacca aaaaggacga tgaaaaagtc aagaagaatg
1021 aacccttaca tgaaaaggaa gccaaggatg acagcaagac caaaacaccc gagaaacaga
1081 cgcccagtgg ccccaccaag ccctctgaag gaccggccaa ggtggaggag gaggcagctc
1141 ccagcatatt tgatgagcct ctggagagag tgaagaacaa tgaccccgag atgactgagg
1201 tgaacgtcaa caactcagac tgcatcacaa atgagatctt ggtccggttt actgaggctc
1261 tggagttcaa cactgtggtt aagctgttcg ccttggccaa cacgcgagcc gatgaccacg
1321 tggcctttgc cattgccatc atgctcaagg ccaacaagac catcaccagc ctcaacctgg
1381 actccaacca catcacaggc aaaggcatcc tggccatctt ccgggccctc ctccagaaca
1441 acacgctgac cgagctccgc ttccacaacc agcgacacat ctgtggaggc aagacggaga
1501 tggagatcgc caagctgctg aaggagaata ctaccctgct caagctgggc taccattttg
1561 agctggccgg gccccgaatg actgtcacca atctgctcag ccgcaacatg gacaagcaga
1621 gacaaaagcg gctgcaggag caaaggcagg cacaggaagc caagggagag aagaaggatc
1681 tgctggaggt acccaaggcc ggggccgtgg ctaagggctc cccaaaacct tcacctcaac
1741 catctccaaa gccctctcca aagaactcac ccaaaaaagg gggtgctcca gctgccccac
1801 caccccctcc ccctcccttg gctccacccc ttatcatgga gaacctgaag aattcactct
1861 caccagctac ccagaggaag atgggagaca aagtcctccc tgcccaggag aagaactccc
1921 gtgaccagct attggctgcc atccgctcca gcaacctcaa gcagctcaag aaggtggaag
1981 tgcccaaact gcttcagtag gaccaggctg ccaggcacca tctgccaatg ccatgactgc
2041 tcaggcctca cctcccaggg ctacacagac cctgcccacc ccatccctgg ctgacctgct
2101 gtggatgtcc ctattctgcc atgggagagt ccaggcctgg gtcacgctca aggaaggatg
2161 ccttatctct tctcactttc cttttcttgt ctctgaggct ctccaaattt tgctttagta
2221 catggagctc aggtttctgg acaagaagag tccttttagc acatcactga gaagatggca
2281 ctgtccaggg cccatgtagc tggcaagctg caaaaggcct gtgatccagg aaagatgtcc
2341 cacagggacc acatccaccc cagccccact gccctccagg gccaggattc aggcctctga
2401 ggagcccacg gggcaaagct gctgggccag tggcactctg tgtgggaaaa tggcagaaag
2461 atggagaggc atgggggccc aaaggggagc gtggggaggg gctgaggata ccccaaagtc
2521 caggctaatt agaggatgtg gcaggggcag tggcctggat gcacagtgcc tgatgggagt
2581 aggctccaga caggaggagt gggacagaca gcagctggac ttgaaggttt gatgccaaag
2641 cagacatttt cctcacaccc acctgctgct gtatgaatag ctgtgtatct gtttttccat
2701 aagattttga taatatatac aaacctttag ctgtgaatgg ctgtgcccca cctgttgtcc
2761 tgaactgtga gtcctgatcc taaccctggg ctccctggag gactctagaa gctcaggttc
2821 cctgccacac tatttgagtt ggccaagaaa taaattcaca tcctcagaaa gtgcagcatg
2881 gaggaaaatc tgaactctaa gcagaagact ctccactgac ctggttgtcc aggtctagaa
2941 ggccaggcct ctactaggtc tgctcctgaa ccagtcctgc tgcctggagt cagtagccag
3001 agttgttctc aggggtgctg gggcagagtg gagcccaggg tgctgggatg gctatattag
3061 gcatgttcag ggatgctcat tccatgactc tgcctaacca tgggctcagg gccaggtcct
3121 cacagcagtc acaggcccag gaaggcggca ggcagagaag tggagtgact atttggagaa
3181 tagcacccat atctgtgtgc cctagggctc agaggggcct catcttcccc agccctcccc
3241 acctgctcac caattccact tcctgcccca actgcaggaa tgctgacaat gctgccatgc
3301 ccaccatcgg gtgtaggtga aaggcatctt tctgaatttc attctcttga aggtgctgcc
3361 accccttggc actgtggaac tgccaccttg ggtctgtgtc acttgtaggt ttctctgcct
3421 ccaggttgcc tcaacagcag gaggcacagc agtttcacca tctttgaggt gagggtgggg
3481 tgccccagct aggaagcaag atcgctgtgc taggtctgac caaaaccaga gggcagtcta
3541 gtcctggggg taaagccctc agatcccagg gtacactctt ctccattccc tccacccact
3601 tgcctgtcac cccagtcacc taagcaatca ctgggcccag aggagaggag acagacacac
3661 actggctcct ggacctaaag ggtatgagct ggagctaagg ccagctagag cttccactgt
3721 cagccctcac tgtcagcccc actgcacccc cctgtgcctg ctgggcactg ggcactagct
3781 agatgcttta ggttgcttca gctgatcctt caactctgtg aggtggatac caatattcta
3841 ttttgcagat agaatttggc ccagagaggt taactaatat atccatgatc acacagctaa
3901 taaaagtcag agctcaaaaa aaaaaaaaaa
//