LOCUS BC078667 3611 bp mRNA linear HUM 16-AUG-2004
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA
clone IMAGE:6107393), partial cds.
ACCESSION BC078667
VERSION BC078667.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3611)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3611)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 58 Row: i Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11321631.
FEATURES Location/Qualifiers
source 1..3611
/db_xref="H-InvDB:HIT000265753"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6107393"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3611
/gene="DDX42"
/gene_synonym="RHELP"
/gene_synonym="RNAHP"
/gene_synonym="SF3b125"
/db_xref="GeneID:11325"
CDS <1..2760
/gene="DDX42"
/gene_synonym="RHELP"
/gene_synonym="RNAHP"
/gene_synonym="SF3b125"
/codon_start=1
/product="DDX42 protein"
/protein_id="AAH78667.1"
/db_xref="GeneID:11325"
/translation="AISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFYKIG
SKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFMA
EVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEED
NLEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRH
KLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIG
IAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAY
NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADR
MFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANE
DVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGL
LHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHR
IGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRF
KGGKGKKLNIGGGGLGYRERPGLGSENMDRGNNNVMSNYEAYKPSTGAMGDRLTAMKA
AFQSQYKSHFVAASLSNQKAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPVTSA
AKGIPGFGNTGNISGAPVTYPSAGAQGVNNTASGNNSREGTGGSNGKRERYTENRGSS
RHSHGETGNRHSDSPRHGDGGRHGDGYRHPESSSRHTDGHRHGENRHGGSAGRHGENR
GANDGRNGESRKEAFNRESKMEPKMEPKVDSSKMDKVDSKTDKTADGFAVPEPPKRKK
SRWDS"
BASE COUNT 1062 a 733 c 952 g 864 t
ORIGIN
1 gccatcagtg ctgggaaaaa ggaggaaccc aaactcccac agcagtccca cagtgccttt
61 ggggcaacca gctcttcttc tggatttgga aagtcagctc caccacagct tccttctttc
121 tacaaaattg gatctaagcg ggccaacttt gatgaagaaa atgcctattt tgaagatgag
181 gaagaagatt ctagcaacgt tgatttacct tacattcctg ctgaaaactc accaactcgc
241 cagcaattcc attccaagcc agtagattct gacagcgatg atgatccctt ggaggcattc
301 atggctgaag tggaggatca ggcagctaga gacatgaaga ggcttgaaga aaaggacaag
361 gaaagaaaaa acgtaaaggg tattcgagat gacattgaag aggaagatga ccaagaagct
421 tattttcgat acatggcaga aaacccaact gctggtgtgg ttcaggagga agaggaagac
481 aatctagaat atgatagtga cggaaatcca attgcaccta ccaaaaaaat cattgatcct
541 cttcccccca ttgatcattc agagattgac tatccaccat ttgaaaaaaa cttttacaat
601 gagcatgaag agataaccaa cctcactcca cagcagttaa tagatctccg gcataagctc
661 aatcttcggg tctctggtgc tgcacctcct agaccaggaa gtagctttgc tcattttggg
721 tttgacgaac aacttatgca ccagattcgg aaatctgaat acacacagcc cactccaata
781 cagtgccagg gtgtgcctgt ggcattaagt ggtagagaca tgattggtat tgccaaaaca
841 ggtagtggga aaactgcagc cttcatttgg cccatgttga ttcatataat ggaccagaag
901 gagttggaac caggtgatgg accaattgca gtgattgtgt gtcctaccag ggagctttgc
961 cagcagatcc atgcagaatg taagcggttt ggaaaagcat ataatcttcg atcagtggcc
1021 gtatatggag gagggagtat gtgggagcag gccaaggccc ttcaggaggg ggcagagatt
1081 gttgtgtgta ccccaggtcg actgatagat catgtgaaaa agaaagctac caatcttcaa
1141 agagtctctt accttgtgtt tgatgaagca gatcgaatgt ttgacatggg atttgagtac
1201 caagttcgat ccatagcaag tcatgttcgt cctgacaggc agactctctt atttagtgca
1261 acttttcgga agaagattga aaagttggcc agagacatcc tgatcgaccc tattcgagtg
1321 gtgcagggag atattggaga ggcaaatgaa gatgtgacac agattgtgga gattctccat
1381 tctggaccta gtaaatggaa ctggcttacc cggcgtctgg tagaatttac ctcttcaggg
1441 agtgtcctcc tctttgttac taaaaaagcc aatgctgaag agctagcgaa taaccttaaa
1501 caggagggtc ataatcttgg gctgctccat ggggatatgg atcagagtga gagaaacaag
1561 gtcatttcag actttaagaa aaaggacatc ccagtcctgg tggccacaga tgttgcagcc
1621 cgtggtctgg acattccttc aattaagact gtcattaact atgatgtggc acgagacatt
1681 gatacccaca cgcataggat tggccgcaca ggaagagcgg gtgagaaagg tgtggcctat
1741 accctactca ctcccaagga cagcaatttt gctggtgacc tggtccggaa cttggaagga
1801 gccaatcaac acgtttctaa ggaactccta gatctggcaa tgcagaatgc ctggtttcgg
1861 aaatctcgat tcaaaggagg gaaaggaaaa aagctgaaca ttggtggagg aggcctaggc
1921 tacagggagc ggcctggcct gggctctgag aacatggatc gaggaaataa caatgtaatg
1981 agcaattatg aggcctacaa gccttccaca ggagctatgg gagatcgact aacggcaatg
2041 aaagcagctt tccagtcaca gtacaagagt cactttgttg cagccagttt aagtaatcag
2101 aaggctggaa gttctgctgc tggggcaagt gggtggacta gtgcagggag cttgaattct
2161 gttccaacta actcagcaca acagggccat aacagtcctg acagccccgt caccagtgcc
2221 gccaagggca tcccaggctt tggcaatact ggcaacatca gtggtgcccc tgtgacctac
2281 ccgtctgccg gagcccaagg agtcaacaac acagcttcag ggaataacag ccgagaaggg
2341 actgggggca gcaacgggaa aagagagaga tatactgaga accggggcag cagccgtcac
2401 agtcacggag agactggcaa tcggcatagc gatagtccac gtcacggaga tggtggtcgc
2461 catggagatg gataccgcca tccagaaagc agcagccgtc atactgatgg ccatcggcac
2521 ggggagaaca gacatggagg aagcgcaggc cggcatgggg agaaccgggg tgcaaatgat
2581 ggtcggaatg gggaaagcag gaaagaagct tttaatcgtg agagcaagat ggagcccaag
2641 atggaaccca aagtggacag cagcaagatg gacaaggtgg acagcaagac agataagaca
2701 gctgacggct ttgctgtccc agagccgcct aaacgcaaga aaagtcgatg ggacagttag
2761 aggggatgtg ctaaagcgtg aaatcagttg tccttaattt ttagaaagat tttggtaact
2821 aggtgtctca gggctgggtt ggggtccaaa gtgtaaggac cccctgccct tagtggagag
2881 ctggagcttg gagacattac cccttcatca gaaggaattt tcggatgttt tcttgggaag
2941 ctgttttggt ccttggaagc agtgagagct gggaagcttc ttttggctct aggtgagttg
3001 tcatgcgggt aagttgaggt tatcttggga taaagggtct tctagggcac aaaactcact
3061 ctaggtttat attgtatgta gcttatattt tttactaagg tgtcacctta taagcatcta
3121 taaattgagt tctttttctt agttgtatgg ccaggcagtc cccattttag gagttggctt
3181 ctgcaaattc aatccattga gctaactgtt ggggagcaat ttggtagttg tagacatttg
3241 cagggaaggg agatgtctga ttctaaatgg gagttgatgc tcaggtcccc agccaggttt
3301 gcatccagcc ctgagacatg taggaaacac ctttcagacc caggctctga agattcccag
3361 aagccacaag gattgaaggg aaaaggtgat cctggtaact gttccaggat tgctccaggt
3421 ttgagatggt attgctaaat ttaaaattaa acaagagacc caacaacagc ttttaaagtg
3481 tcttctattt cattgtattt tttttaactt gccccaatga tagaaaagtc ttttgctgaa
3541 atgattttga tgatttttgt ttatcgttta taaaaaggaa aagaaatata caaactttga
3601 aaaaaaaaaa a
//