LOCUS BC078168 2664 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens coiled-coil domain containing 88A, mRNA (cDNA clone
IMAGE:6176807), partial cds.
ACCESSION BC078168
VERSION BC078168.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2664)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2664)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JUL-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: l Column: 19.
FEATURES Location/Qualifiers
source 1..2664
/db_xref="H-InvDB:HIT000265727"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6176807"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..>2664
/gene="CCDC88A"
/gene_synonym="APE"
/gene_synonym="GIRDIN"
/gene_synonym="GIV"
/gene_synonym="GRDN"
/gene_synonym="HkRP1"
/db_xref="GeneID:55704"
/db_xref="HGNC:HGNC:25523"
/db_xref="MIM:609736"
CDS <1..>2664
/gene="CCDC88A"
/gene_synonym="APE"
/gene_synonym="GIRDIN"
/gene_synonym="GIV"
/gene_synonym="GRDN"
/gene_synonym="HkRP1"
/codon_start=2
/product="CCDC88A protein"
/protein_id="AAH78168.1"
/db_xref="GeneID:55704"
/db_xref="HGNC:HGNC:25523"
/db_xref="MIM:609736"
/translation="EIFTPLLEQFMTSPLVTWVKTFGPLAAGNGTNLDEYVALVDGVF
LNQVMLQINPKLESQRVNKKVNNDASLRMHNLSILVRQIKFYYQETLQQLIMMSLPNV
LIIGKNPFSEQGTEEVKKLLLLLLGCAVQCQKKEEFIERIQGLDFDTKAAVAAHIQEV
THNQENVFDLQWMEVTDMSQEDIEPLLKNMALHLKRLIDERDEHSETIIELSEERDGL
HFLPHASSSAQSPCGSPGMKRTESRQHLSVELADAKAKIRRLRQELEEKTEQLLDCKQ
ELEQMEIELKRLQQENMNLLSDARSARMYRDELDALREKAVRVDKLESEVSRYKERLH
DIEFYKARVEELKEDNQVLLETKTMLEDQLEGTRARSDKLHELEKENLQLKAKLHDME
MERDMDRKKIEELMEENMTLEMAQKQSMDESLHLGWELEQISRTSELSEAPQKSLGHE
VNELTSSRLLKLEMENQSLTKTVEELRTTVDSVEGNASKILKMEKENQRLSKKVEILE
NEIVQEKQSLQNCQNLSKDLMKEKAQLEKTIETLRENSERQIKILEQENEHLNQTVSS
LRQRSQISAEARVKDIEKENKILHESIKETSSKLSKIEFEKRQIKKELEHYKEKGERA
EELENELHHLEKENELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSFKNL
TFQLESLEKENSQLDEENLELRRNVESLKCASMKMAQLQLENKELESEKEQLKKGLEL
LKASFKKTERLEVSYQGLDIENQRLQKTLENSNKKIQQLESELQDLEMENQTLQKNLE
ELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVKI
GNLEKENKTLSKEIGIYKESCVRLKELKKKK"
BASE COUNT 1097 a 395 c 566 g 606 t
ORIGIN
1 cgaaattttt actccccttc tggagcagtt catgaccagc cctttggtca cttgggttaa
61 aacgtttgga cctctggccg caggaaatgg gaccaacctt gatgaatatg tggctttggt
121 ggatggggta ttcttgaacc aggtcatgct ccaaattaat cctaaattgg agagtcagag
181 agtaaataaa aaagtcaata atgatgcctc acttagaatg cacaatctat ccattttggt
241 gagacagata aaattttatt accaggagac tttgcagcaa ttgatcatga tgtcgttgcc
301 aaatgtctta atcattggca aaaatccctt ttctgaacaa ggcacagaag aagttaaaaa
361 actgctttta cttttattgg gttgtgcagt tcagtgtcag aaaaaagagg aatttattga
421 aagaattcaa ggtttagatt ttgatacaaa agcagcggtt gccgcacata ttcaagaggt
481 aactcataat caggaaaatg tgtttgacct gcaatggatg gaagtgactg atatgtcgca
541 ggaggacata gaaccactct tgaaaaatat ggcattgcat ctaaaaagac ttatagatga
601 gagagatgaa cattcagaga ctatcataga actctctgaa gagcgggatg gtctccattt
661 tctaccccat gcctcttcat ctgcacagtc accctgtggt tctccaggca tgaagcgaac
721 agaaagtcga caacatctgt cggtggaact ggcagatgct aaagccaaga taagaaggct
781 taggcaggaa ttggaggaaa agactgagca gttgttggat tgtaaacaag aacttgagca
841 aatggaaata gaactcaaaa ggctgcaaca agagaacatg aatttgcttt cggatgctcg
901 ctctgccaga atgtaccgag atgaattaga tgcacttcga gagaaagcag tcagagtcga
961 taagcttgaa agtgaagtca gcagatataa agagagacta catgatattg aattttataa
1021 ggcaagagtt gaggaattaa aagaagacaa tcaagtttta ttagaaacaa aaaccatgtt
1081 ggaagaccaa ctagagggaa ctcgtgctcg ttctgataaa ttacatgaat tagaaaaaga
1141 gaacttacaa ctgaaagcta aacttcatga tatggaaatg gaacgagata tggatagaaa
1201 aaagattgaa gaattaatgg aagaaaatat gactttggaa atggcacaga aacaaagtat
1261 ggatgaatca ttacatcttg gctgggaact ggaacagata tccagaacta gtgaactttc
1321 cgaagcaccc cagaaatccc tgggccatga ggtgaatgag ttgacatcaa gtagattatt
1381 gaagctagag atggaaaatc aaagtttgac aaaaaccgta gaagagcttc ggactactgt
1441 ggattctgta gaaggcaatg cttccaaaat cctgaaaatg gaaaaagaaa atcaaaggct
1501 cagtaaaaag gttgagattc ttgaaaatga gattgttcaa gaaaagcaaa gtcttcagaa
1561 ttgtcagaat ttaagcaagg atctaatgaa ggagaaagct cagcttgaaa aaacaataga
1621 aacactgaga gaaaattcag agagacagat taagatactg gaacaggaaa atgaacatct
1681 gaatcaaaca gtgtcttcct taaggcagcg gtcccagata agtgcagaag caagagtgaa
1741 agacattgaa aaagaaaaca aaattcttca tgaatctatc aaagaaacaa gtagcaagct
1801 aagcaagatt gaatttgaaa aaagacaaat taaaaaagaa ttggaacatt ataaagaaaa
1861 aggagaacga gctgaagaac ttgaaaatga attgcatcat cttgaaaaag aaaatgaatt
1921 attacagaaa aaaataacta atttaaaaat tacttgtgaa aaaattgagg ccttagaaca
1981 agaaaattca gagctagaaa gagaaaatag aaaattaaaa aaaacattgg atagctttaa
2041 aaatctgacc tttcagttag aatccctaga aaaagagaat tcccaacttg atgaggaaaa
2101 cttagaactg cgaaggaatg tagaatcttt gaagtgtgca agcatgaaaa tggctcagct
2161 acagctagaa aacaaagaac tggaaagtga aaaagagcaa cttaagaagg gtttggagct
2221 cctgaaagca tctttcaaga aaacagaacg cttagaagtt agctaccagg gtttagatat
2281 agaaaatcaa agactgcaaa aaactttaga gaacagcaat aaaaaaatcc agcaattaga
2341 gagtgaacta caagacttag agatggaaaa tcaaacattg cagaaaaacc tagaagaact
2401 aaaaatatct agcaaaagac tagaacagct ggaaaaagaa aataaatcat tagagcaaga
2461 gacttctcaa ctggaaaagg ataagaaaca attggagaag gaaaataaga gactccgaca
2521 acaagcagaa attaaagata ccacattaga agaaaataat gtgaagattg gaaatttgga
2581 aaaagaaaac aaaaccctat ccaaagaaat tggtatatat aaagaatctt gtgtccgtct
2641 gaaagaacta aaaaaaaaaa aaaa
//