LOCUS BC078166 3119 bp mRNA linear HUM 09-DEC-2005
DEFINITION Homo sapiens senataxin, mRNA (cDNA clone IMAGE:6178156), partial
cds.
ACCESSION BC078166
VERSION BC078166.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3119)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3119)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JUL-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: l Column: 13.
FEATURES Location/Qualifiers
source 1..3119
/db_xref="H-InvDB:HIT000265725"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6178156"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3119
/gene="SETX"
/gene_synonym="AOA2"
/gene_synonym="bA479K20.2"
/gene_synonym="KIAA0625"
/gene_synonym="RP11-479K20.3"
/db_xref="GeneID:23064"
/db_xref="HGNC:HGNC:445"
/db_xref="IMGT/GENE-DB:445"
/db_xref="MIM:608465"
CDS <1..2754
/gene="SETX"
/gene_synonym="AOA2"
/gene_synonym="bA479K20.2"
/gene_synonym="KIAA0625"
/gene_synonym="RP11-479K20.3"
/codon_start=1
/product="SETX protein"
/protein_id="AAH78166.1"
/db_xref="GeneID:23064"
/db_xref="HGNC:HGNC:445"
/db_xref="IMGT/GENE-DB:445"
/db_xref="MIM:608465"
/translation="QEWLNSPNRENFYQLQVRKFPADYIKYWEFAVYLEECELAKQLY
PKENDLVFLAPERINEEKKDTERNDIQDLHEYHSGYVHKFRRTSVMRNGKAECYLSIQ
TQENFPANLNELVNCIVISSLVTTQRKLKAMSLLGSRNQLARAVLNPNPMDFCTKDLL
TTTSERIIAYLRDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLY
RLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLG
NCGDINLVRLGPEKSINSEVLKFSLDSQVNHRMKKELPSHVQAMHKRKEFLDYQLDEL
SRQRALCRGGREIQRQELDENISKVSKERQELASKIKEVQGRPQKTQSIIILESHIIC
CTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQ
LPPTVISMKAQEYGYDQSMMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFP
SNYVYNRNLKTNRQTEAIRCSSDWPFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEI
IKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDC
VIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQ
KRGAIIKTCDKNYRHDAVKILKLKPVLQRSLTHPPTIAPEGSRPQGGLPSSKLDSGFA
KTSVAASLYHTPSDSKEITLTVTSKDPERPPVHDQLQDPRLLKRMGIEVKGGIFLWDP
QPSSPQHPGATPPTGEPGFPVVHQDLSHVQQPAAVVAALSSHKPPVRGEPPAAGPEAS
TCQSKCDDPEEELCHRREARAFSEGEQEKCGSETHHTRRNSRWDKRTLEQEDSSSKKR
KLL"
BASE COUNT 992 a 653 c 711 g 763 t
ORIGIN
1 caagaatggc tcaactctcc aaatagagag aatttctatc agttgcaagt acgaaaattt
61 cctgccgatt atataaaata ctgggagttt gcagtttatc tggaagaatg tgaactggct
121 aaacagcttt atccaaagga aaacgatttg gtgtttttag ctcctgagag aataaatgaa
181 gagaagaaag atacagagag aaatgacata caagatctcc acgaatatca ttctggttat
241 gttcataaat ttcgccgcac gtcagtcatg cgtaatggga aagctgagtg ttacctttcc
301 atccagactc aagagaactt tccggccaat ttaaacgaac ttgtgaattg tattgtaatc
361 agttctctgg taactacaca aaggaagttg aaagccatgt ctctgttggg tagtcggaac
421 caactggcta gagctgttct gaatccaaac cctatggact tctgtacaaa agatttactg
481 actacaacat ctgagagaat tattgcgtac ttaagagatt tcaatgaaga ccaaaagaaa
541 gcaatagaaa ctgcatatgc tatggtgaaa cactcaccat cagttgccaa aatctgcttg
601 attcatggac cacctggaac aggaaaatca aaaactattg ttggcctcct ctatcgtcta
661 ctgacagaga accagaggaa ggggcattca gacgaaaact ccaatgccaa aatcaaacaa
721 aaccgtgtcc tcgtgtgtgc accttccaat gcagctgttg atgaactcat gaaaaaaatt
781 atccttgaat tcaaagaaaa atgtaaagac aagaagaatc ctttaggaaa ctgtggagat
841 ataaatttag tacgactggg tccagaaaag tctattaata gtgaggttct aaagttcagt
901 ttggacagcc aagtaaacca cagaatgaaa aaagagttac cttctcatgt tcaggcgatg
961 cataaaagaa aggaatttct agattatcag ctggatgagc tttcccggca gcgagctcta
1021 tgccgaggtg gacgggaaat acagaggcaa gaattagatg aaaacatttc caaagtttct
1081 aaggaaaggc aggaacttgc ttctaaaatt aaagaggttc aaggacgccc acagaaaaca
1141 cagagtatca tcatcttaga gtcccatatc atctgctgca cgttgagcac aagtggtggt
1201 ttactacttg agtctgcttt ccgtgggcaa gggggtgtcc ccttcagctg tgtcattgtt
1261 gatgaggctg gacagtcttg tgaaattgag actcttactc cactcatcca tcgctgcaat
1321 aagctcatcc tagtaggaga tcctaagcag ctccctccga cagtcatctc tatgaaagca
1381 caggagtatg gctacgacca gtcaatgatg gctcgcttct gcagactgct ggaagagaat
1441 gtagaacaca acatgatcag caggctgccc attctacagc tcactgttca gtacaggatg
1501 catccagaca tatgcctctt cccttctaat tatgtttata acagaaactt aaaaacaaat
1561 agacagacag aagccattcg atgttcatca gattggccat ttcagccata ccttgtgttt
1621 gatgttggag atggttcaga aagacgggat aatgactcat atataaatgt tcaagaaata
1681 aaactggtga tggaaataat taagcttatt aaagacaaaa gaaaggatgt tagttttcga
1741 aacattggca taataactca ttacaaggcc cagaagacga tgattcagaa ggatttggac
1801 aaagagttcg atagaaaagg accagcagaa gtagacactg tggatgcatt ccagggtcgg
1861 cagaaggatt gtgttattgt tacgtgtgtc agagcaaata gcatccaagg ttcaattgga
1921 ttcctggcaa gtttgcagag attgaatgtc accatcacac gagccaagta cagcctcttc
1981 atcctcggac atttgaggac cctgatggaa aaccagcatt ggaatcagct gattcaggat
2041 gctcagaagc gtggtgccat tattaagacc tgtgacaaaa actatagaca tgatgcagtg
2101 aagattctga aactcaagcc tgtgctgcag agaagtctca ctcaccctcc taccatagcc
2161 ccagaggggt ccagacccca gggtggtttg cccagcagca agctagacag tggatttgcc
2221 aagacatctg ttgctgcttc tctataccac acaccctctg actccaagga aattactctt
2281 actgttactt caaaggaccc tgaaagacct cctgttcatg accaacttca ggacccacga
2341 ctgctgaaga ggatgggcat tgaggtcaaa ggaggaatat tcctttggga tccacaaccc
2401 tcgagccccc agcatcctgg agcaacacct cctacgggcg agccgggctt ccctgtcgtt
2461 caccaggacc tgagccatgt acagcagccc gctgctgtag tggctgctct gagcagccac
2521 aaacctcccg tgcggggcga acctccagct gccggtcccg aggcttccac gtgtcagagc
2581 aaatgtgatg acccggaaga ggagctctgt cacaggagag aggccagggc tttcagtgaa
2641 ggggagcagg agaagtgtgg ttccgagacc catcacacca ggaggaactc taggtgggac
2701 aagaggacac tggagcagga ggacagcagt tccaagaaaa gaaagctttt ataggaaagc
2761 ccagtgacat gggccagcag ccacagcata ttgtaaactg aagatgacca gctcgtggga
2821 ccatctagat aagcttgttt tttgtaagga gtttgtgtgc tgttggaaaa catggaaaat
2881 gcatccttaa cacctgagcc tctggtcatc ttcagtattt tctgtcattt gcaaaagctt
2941 tcagagggca ttgtgtatcc gtaataatgt ccttgaagtc agagactgga aatgttgatc
3001 tcttagtctt ctatagacaa ggaggtcaga ctggagtgaa tgttgtaaaa gttgaaatgt
3061 atatttgtat agcaaataac aaaatccttt taaaatttaa aaaaaaaaaa aaaaaaaaa
//