LOCUS BC077727 2098 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens atlastin GTPase 3, mRNA (cDNA clone MGC:78594
IMAGE:5952471), complete cds.
ACCESSION BC077727
VERSION BC077727.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2098)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2098)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JUL-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 54 Row: h Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45827805.
FEATURES Location/Qualifiers
source 1..2098
/db_xref="H-InvDB:HIT000265691"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:78594 IMAGE:5952471"
/tissue_type="Pancreas, ductal carcinoma"
/clone_lib="NIH_MGC_110"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2098
/gene="ATL3"
/db_xref="GeneID:25923"
/db_xref="HGNC:HGNC:24526"
/db_xref="MIM:609369"
CDS 287..1912
/gene="ATL3"
/codon_start=1
/product="atlastin GTPase 3"
/protein_id="AAH77727.1"
/db_xref="GeneID:25923"
/db_xref="HGNC:HGNC:24526"
/db_xref="MIM:609369"
/translation="MLSPQRVAAAASRGADDAMESSKPGPVQVVLVQKDQHSFELDEK
ALASILLQDHIRDLDVVVVSVAGAFRKGKSFILDFMLRYLYSQKESGHSNWLGDPEEP
LTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIF
ALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFP
YEYSYGLQGGMAFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSP
DFDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQG
EDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGEKPYLSPDILEEKHCEFKQ
LALDHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFRTPAVLFTG
IVALYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGAIDFGAA
YVLEQASSHIGNSTQATVRDAVVGRPSMDKKAQ"
BASE COUNT 553 a 496 c 518 g 531 t
ORIGIN
1 gcttcgcgca cacgcggcag gcggtggcgg gattctgccg cgtgcgcttt cccgccccgc
61 ctcgcctagc ctcgtcctgc gctcgccacg cctcgggctg tccgttgggc cacgcagacc
121 gcgctgcgct cgctccgtcg cggctccgcg tgccccacct tctggctagt tttttctaga
181 gcccaggctc cgcccgtttc ccgcttccag ggcccggttc gttcccgccc gcacccgtcc
241 ctctcctctg cacccctgct gcttctgctt tgaaggcgga ggctccatgt tgtcccctca
301 gcgagtggca gcagctgcct caagaggagc agatgatgcc atggagagca gcaagcctgg
361 tccagtgcag gttgttttgg ttcagaaaga tcaacattcc tttgagctag atgagaaagc
421 cttggccagc atcctcttgc aggaccacat ccgagatctt gatgtggtgg tggtttcagt
481 ggctggtgcc ttccgaaagg gcaagtcctt cattctggat tttatgctac gatacttata
541 ttctcagaag gaaagtggcc attcaaattg gttgggtgac ccagaagaac cgttaacagg
601 attttcctgg agagggggat ctgatccaga aaccactggg attcaaatct ggagtgaagt
661 tttcactgtg gagaagccag gtgggaagaa ggttgcagtt gttctgatgg atacccaggg
721 ggcatttgac agccagtcaa ctgtgaaaga ctgtgctacc atctttgctc taagcactat
781 gactagttct gttcagattt ataatttatc tcagaacatt caagaagatg atcttcaaca
841 gctgcagctc ttcacagaat acggtcgtct ggcaatggat gaaattttcc aaaagccttt
901 ccagacactg atgtttttgg ttagagattg gagtttccct tatgaatata gctatggact
961 ccaaggagga atggcatttt tggataagcg tttacaggtg aaggaacatc aacatgaaga
1021 aattcagaat gttcgaaatc acattcactc atgtttctcc gatgtcacct gctttctctt
1081 accacatcca ggactccagg tggccacaag ccctgacttt gatgggaaat taaaagatat
1141 tgctggtgaa ttcaaagagc agttacaggc actgataccg tatgtattaa acccatctaa
1201 gttaatggaa aaggagatca atggctcaaa ggtcacctgt cggggactac tggagtattt
1261 taaggcatat attaaaattt atcaaggaga agatctgcct caccccaagt ccatgcttca
1321 ggccactgct gaagccaaca acttagcagc tgcagcctct gccaaggaca tttattataa
1381 caacatggaa gaggtttgtg ggggagagaa accttatttg tctccagaca ttctagagga
1441 gaagcactgt gaattcaaac aacttgctct ggaccatttt aagaagacca agaagatggg
1501 tgggaaggat ttcagctttc gttaccagca ggagctggag gaggaaatca aggaattata
1561 tgagaacttc tgcaagcaca atggtagcaa gaacgtcttc agcaccttcc gaacccctgc
1621 agtgctgttc acgggcattg tagctttgta catagcctca ggcctcactg gcttcatagg
1681 tcttgaggtt gtagcccagt tgttcaactg tatggttgga ctactgttaa tagcactcct
1741 cacctggggc tacatcaggt attctggtca atatcgtgag ctgggcggag ctattgattt
1801 tggtgccgca tatgtgttgg agcaggcttc ttctcatatc ggtaattcca ctcaggccac
1861 tgtgagggat gcagttgttg gaagaccatc catggataaa aaagctcaat agcatcttaa
1921 cgtgaagatc aaacaagaac acaacaagcc cctactgatt tctgggtttc tgccacggcc
1981 acaggttcat atccagagga atggcagatc tgagacgatc caggaagagc taaaacatgg
2041 ccctgtaata aatgagcaga cctctaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//