LOCUS BC077720 3331 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens RAB11 family interacting protein 1 (class I), mRNA (cDNA clone MGC:78448 IMAGE:6537110), complete cds. ACCESSION BC077720 VERSION BC077720.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3331) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3331) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (19-JUL-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 54 Row: o Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 50659103. FEATURES Location/Qualifiers source 1..3331 /db_xref="H-InvDB:HIT000265685" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:78448 IMAGE:6537110" /tissue_type="Lung, epidermoid carcinoma" /clone_lib="NIH_MGC_101" /lab_host="DH10B" /note="Vector: pOTB7" gene 1..3331 /gene="RAB11FIP1" /gene_synonym="FLJ22524" /gene_synonym="FLJ22622" /gene_synonym="NOEL1A" /gene_synonym="rab11-FIP1" /gene_synonym="RCP" /db_xref="GeneID:80223" /db_xref="HGNC:HGNC:30265" /db_xref="MIM:608737" CDS 27..1976 /gene="RAB11FIP1" /gene_synonym="FLJ22524" /gene_synonym="FLJ22622" /gene_synonym="NOEL1A" /gene_synonym="rab11-FIP1" /gene_synonym="RCP" /codon_start=1 /product="RAB11 family interacting protein 1 (class I)" /protein_id="AAH77720.1" /db_xref="GeneID:80223" /db_xref="HGNC:HGNC:30265" /db_xref="MIM:608737" /translation="MSLMVSAGRGLGAVWSPTHVQVTVLQARGLRAKGPGGTSDAYAV IQVGKEKYATSVSERSLGAPVWREEATFELPSLLSSGPAAAATLQLTVLHRALLGLDK FLGRAEVDLRDLHRDQGRRKTQWYKLKSKPGKKDKERGEIEVDIQFMRNNMTASMFDL SMKDKSRNPFGKLKDKIKGKNKDSGSDTASAIIPSTTPSVDSDDESVVKDKKKKSKIK TLLSKSNLQKTPLSQSMSVLPTSKPEKVLLRPGDFQSQWDEDDNEDESSSASDVMSHK RTASTDLKQLNQVNFTLPKKEGLSFLGGLRSKNDVLSRSNVCINGNHVYLEQPEAKGE IKDSSPSSSPSPKGFRKKHLFSSTENLAAGSWKEPAEGGGLSSDRQLSESSTKDSLKS MTLPSYRPAPLVSGDLRENMAPANSEATKEAKESKKPESRRSSLLSLMTGKKDVAKGS EGENPLTVPGREKEGMLMGVKPGEDASGPAEDLVRRSEKDTAAVVSRQGSSLNLFEDV QITEPEAEPESKSEPRPPISSPRAPQTRAVKPRLHPVKPMNAMATKVANCSLGTATII SENLNNEVMMKKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNL LVRVMEETPNILRIPTQVGKKAGKM" BASE COUNT 869 a 844 c 863 g 755 t ORIGIN 1 ctcgcttctg gagtgttatc gtcaccatgt ccctaatggt ctcggctggc cggggcctgg 61 gggccgtgtg gtccccaacc cacgtgcagg tgacggtgct gcaggcgcgg ggcctgcggg 121 ccaagggccc cgggggcacg agcgacgcgt acgcggtgat ccaggtgggc aaggagaagt 181 acgccacctc cgtgtcggag cgcagcctgg gcgcgcccgt gtggcgcgag gaggccacct 241 tcgagctgcc atcgctgctg tcctccggac ccgcggccgc cgccaccctg cagctcaccg 301 tgctgcaccg cgcgctgctc ggcctcgaca agttcctggg ccgcgccgag gtggacctgc 361 gggatctgca ccgcgaccag ggccgcagga agacgcagtg gtataagttg aaatccaaac 421 caggaaagaa ggacaaggag cgaggagaaa ttgaggttga catccagttt atgagaaaca 481 acatgactgc cagcatgttt gacctttcta tgaaagacaa gtctcggaat ccatttggaa 541 agctgaagga caagatcaag gggaagaata aggacagtgg gtcagacacc gcctccgcca 601 tcatccctag cacgacacct tcggtcgaca gtgatgatga gtctgtggtt aaagacaaga 661 aaaagaaatc aaagatcaag accttacttt ccaagtcaaa tttgcagaag acgcctcttt 721 cccagtccat gtctgtcctg ccgacttcaa agccagaaaa agtgctgctt cgtcccggag 781 actttcagtc ccagtgggat gaagatgaca atgaggatga gtcctcctcg gcctcggatg 841 tcatgtctca caagagaaca gcgagtacgg atcttaagca actgaaccag gtcaacttta 901 cccttcccaa gaaggaagga ctttcctttc ttggtggcct tcggtctaag aatgatgtcc 961 tttcccgctc taatgtctgc atcaatggga accatgttta cctggagcag ccagaagcca 1021 agggtgagat caaggatagc agcccgtcct cctccccatc ccccaagggc ttcagaaaga 1081 agcatttgtt ctcttctaca gagaacctgg cggctgggtc ttggaaggag cctgctgaag 1141 gaggtgggct gtcttctgac aggcagctct ccgaatcttc caccaaggac tccttgaagt 1201 ctatgaccct gccgtcctac cgacctgccc cactggtcag tggggacctc agggaaaaca 1261 tggcccccgc aaactcagag gccacaaaag aagctaagga gagcaagaag ccagagagca 1321 ggaggtcctc tttgctgtct ctgatgacgg ggaagaagga tgtggctaag ggcagtgaag 1381 gtgaaaaccc tctcacggtc ccagggaggg agaaggaagg catgctgatg ggggttaagc 1441 cgggggagga cgcatcgggg cctgctgaag accttgtgag aagatctgag aaagatactg 1501 cagctgttgt ctccagacag ggcagctccc tgaacctctt tgaagatgtg cagatcacag 1561 aaccagaagc tgagccagag tccaagtctg aaccgagacc tccaatttcc tctccgaggg 1621 ctccccagac cagagctgtc aagccccgac ttcatcctgt gaagccaatg aatgcaatgg 1681 ccaccaaggt tgctaactgc agcttgggaa ctgccaccat catcagtgag aacttgaaca 1741 atgaggtcat gatgaagaaa tacagcccct cggaccctgc atttgcatat gcgcagctga 1801 cccacgatga gctgattcag ctggtcctca aacagaagga aacgataagc aagaaggagt 1861 tccaggtccg cgagctggaa gactacattg acaacctgct tgtcagggtc atggaagaaa 1921 cccccaatat cctccgcatc ccgactcagg ttggcaaaaa agcaggaaag atgtaaatca 1981 gcagaaaaaa aacaccgaga cgtttctgtg acttcacttt cacctgctcc aggggtcaag 2041 gacttgcctt gcctgataac cagccagcag gctccgaatc accatctccc tcacatgtta 2101 tccggcaaga gtgaattcta ccaatggaag ccaggttaat gattacaatt aatcttttac 2161 tgtacattcc caaggcttta gttttaaatg ccactgtgcc tttaacaagg ttgtaaatat 2221 tttatgccca ccagagatgt ggtcataaga tctgatcctg agccagagat tcagatggca 2281 caggaagtat tcatgtattt taacactggg gttttctttc tttcatactg agattttttt 2341 tcagtatgta tcctccagct cttaaagctt acctgagaaa gctttaaatg agaaaaggac 2401 catgcgattg gtgctgtgtt acatacacat actttcttgg cttctgagta gctcaggtgt 2461 ggcttttggc tgcagatgtt aaattttgat accatgtaaa cctacccagc ttctcagact 2521 tgggtcttgt tttttgatgg gaacagaggt gtttagagaa agcctctgag tatgcctttc 2581 agattttgaa caagcggcct tttctaaaca tcgacttcta ctactctcta gccttaaaat 2641 accttctgct tagatccagg gcccttctac tggagatagg aaaagtagaa ttcaggaatt 2701 aaaagaatta ctctttattc aatttgagga acttggtgaa agcccctcct cttatgacag 2761 ccaggttcct gctggctaga ccagcctatt cagcgctttg ctaggggatt gggtggtcca 2821 cgcactcgct aatacagttc tccaggtgtg gaatgatgtc aatacgattg cttggccttt 2881 tccccctgtg cctttgctcg gtgctctggt ttcctcagca acactccttg taaggggcag 2941 agacagggtc caccaactcc ccaagatgaa gaagcccctt caggccagtc gtggtggctc 3001 atgcctgtaa tcccagcact ttgcaaggcc gaggagggtg gatcacttga ggtcaggagt 3061 tcgagaccag cctgaccaac atggcgaaac cccatctcta ctaaaaatac aaaaattagc 3121 ttggcatggt ggtgcgtgcc tgtaatccca gctactcggg aggctggggc aggagaattg 3181 cttgaacttg ggagatggag gctgcagcga gccaagatcg tgccactgca ctccagcctg 3241 ggcaagagtt tttttaagac tcttaaaaaa agagcctggg caattttttt aagactctgt 3301 cttaaaaaaa actaaaaaaa aaaaaaaaaa a //