LOCUS BC077720 3331 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens RAB11 family interacting protein 1 (class I), mRNA
(cDNA clone MGC:78448 IMAGE:6537110), complete cds.
ACCESSION BC077720
VERSION BC077720.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3331)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3331)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JUL-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 54 Row: o Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50659103.
FEATURES Location/Qualifiers
source 1..3331
/db_xref="H-InvDB:HIT000265685"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:78448 IMAGE:6537110"
/tissue_type="Lung, epidermoid carcinoma"
/clone_lib="NIH_MGC_101"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..3331
/gene="RAB11FIP1"
/gene_synonym="FLJ22524"
/gene_synonym="FLJ22622"
/gene_synonym="NOEL1A"
/gene_synonym="rab11-FIP1"
/gene_synonym="RCP"
/db_xref="GeneID:80223"
/db_xref="HGNC:HGNC:30265"
/db_xref="MIM:608737"
CDS 27..1976
/gene="RAB11FIP1"
/gene_synonym="FLJ22524"
/gene_synonym="FLJ22622"
/gene_synonym="NOEL1A"
/gene_synonym="rab11-FIP1"
/gene_synonym="RCP"
/codon_start=1
/product="RAB11 family interacting protein 1 (class I)"
/protein_id="AAH77720.1"
/db_xref="GeneID:80223"
/db_xref="HGNC:HGNC:30265"
/db_xref="MIM:608737"
/translation="MSLMVSAGRGLGAVWSPTHVQVTVLQARGLRAKGPGGTSDAYAV
IQVGKEKYATSVSERSLGAPVWREEATFELPSLLSSGPAAAATLQLTVLHRALLGLDK
FLGRAEVDLRDLHRDQGRRKTQWYKLKSKPGKKDKERGEIEVDIQFMRNNMTASMFDL
SMKDKSRNPFGKLKDKIKGKNKDSGSDTASAIIPSTTPSVDSDDESVVKDKKKKSKIK
TLLSKSNLQKTPLSQSMSVLPTSKPEKVLLRPGDFQSQWDEDDNEDESSSASDVMSHK
RTASTDLKQLNQVNFTLPKKEGLSFLGGLRSKNDVLSRSNVCINGNHVYLEQPEAKGE
IKDSSPSSSPSPKGFRKKHLFSSTENLAAGSWKEPAEGGGLSSDRQLSESSTKDSLKS
MTLPSYRPAPLVSGDLRENMAPANSEATKEAKESKKPESRRSSLLSLMTGKKDVAKGS
EGENPLTVPGREKEGMLMGVKPGEDASGPAEDLVRRSEKDTAAVVSRQGSSLNLFEDV
QITEPEAEPESKSEPRPPISSPRAPQTRAVKPRLHPVKPMNAMATKVANCSLGTATII
SENLNNEVMMKKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNL
LVRVMEETPNILRIPTQVGKKAGKM"
BASE COUNT 869 a 844 c 863 g 755 t
ORIGIN
1 ctcgcttctg gagtgttatc gtcaccatgt ccctaatggt ctcggctggc cggggcctgg
61 gggccgtgtg gtccccaacc cacgtgcagg tgacggtgct gcaggcgcgg ggcctgcggg
121 ccaagggccc cgggggcacg agcgacgcgt acgcggtgat ccaggtgggc aaggagaagt
181 acgccacctc cgtgtcggag cgcagcctgg gcgcgcccgt gtggcgcgag gaggccacct
241 tcgagctgcc atcgctgctg tcctccggac ccgcggccgc cgccaccctg cagctcaccg
301 tgctgcaccg cgcgctgctc ggcctcgaca agttcctggg ccgcgccgag gtggacctgc
361 gggatctgca ccgcgaccag ggccgcagga agacgcagtg gtataagttg aaatccaaac
421 caggaaagaa ggacaaggag cgaggagaaa ttgaggttga catccagttt atgagaaaca
481 acatgactgc cagcatgttt gacctttcta tgaaagacaa gtctcggaat ccatttggaa
541 agctgaagga caagatcaag gggaagaata aggacagtgg gtcagacacc gcctccgcca
601 tcatccctag cacgacacct tcggtcgaca gtgatgatga gtctgtggtt aaagacaaga
661 aaaagaaatc aaagatcaag accttacttt ccaagtcaaa tttgcagaag acgcctcttt
721 cccagtccat gtctgtcctg ccgacttcaa agccagaaaa agtgctgctt cgtcccggag
781 actttcagtc ccagtgggat gaagatgaca atgaggatga gtcctcctcg gcctcggatg
841 tcatgtctca caagagaaca gcgagtacgg atcttaagca actgaaccag gtcaacttta
901 cccttcccaa gaaggaagga ctttcctttc ttggtggcct tcggtctaag aatgatgtcc
961 tttcccgctc taatgtctgc atcaatggga accatgttta cctggagcag ccagaagcca
1021 agggtgagat caaggatagc agcccgtcct cctccccatc ccccaagggc ttcagaaaga
1081 agcatttgtt ctcttctaca gagaacctgg cggctgggtc ttggaaggag cctgctgaag
1141 gaggtgggct gtcttctgac aggcagctct ccgaatcttc caccaaggac tccttgaagt
1201 ctatgaccct gccgtcctac cgacctgccc cactggtcag tggggacctc agggaaaaca
1261 tggcccccgc aaactcagag gccacaaaag aagctaagga gagcaagaag ccagagagca
1321 ggaggtcctc tttgctgtct ctgatgacgg ggaagaagga tgtggctaag ggcagtgaag
1381 gtgaaaaccc tctcacggtc ccagggaggg agaaggaagg catgctgatg ggggttaagc
1441 cgggggagga cgcatcgggg cctgctgaag accttgtgag aagatctgag aaagatactg
1501 cagctgttgt ctccagacag ggcagctccc tgaacctctt tgaagatgtg cagatcacag
1561 aaccagaagc tgagccagag tccaagtctg aaccgagacc tccaatttcc tctccgaggg
1621 ctccccagac cagagctgtc aagccccgac ttcatcctgt gaagccaatg aatgcaatgg
1681 ccaccaaggt tgctaactgc agcttgggaa ctgccaccat catcagtgag aacttgaaca
1741 atgaggtcat gatgaagaaa tacagcccct cggaccctgc atttgcatat gcgcagctga
1801 cccacgatga gctgattcag ctggtcctca aacagaagga aacgataagc aagaaggagt
1861 tccaggtccg cgagctggaa gactacattg acaacctgct tgtcagggtc atggaagaaa
1921 cccccaatat cctccgcatc ccgactcagg ttggcaaaaa agcaggaaag atgtaaatca
1981 gcagaaaaaa aacaccgaga cgtttctgtg acttcacttt cacctgctcc aggggtcaag
2041 gacttgcctt gcctgataac cagccagcag gctccgaatc accatctccc tcacatgtta
2101 tccggcaaga gtgaattcta ccaatggaag ccaggttaat gattacaatt aatcttttac
2161 tgtacattcc caaggcttta gttttaaatg ccactgtgcc tttaacaagg ttgtaaatat
2221 tttatgccca ccagagatgt ggtcataaga tctgatcctg agccagagat tcagatggca
2281 caggaagtat tcatgtattt taacactggg gttttctttc tttcatactg agattttttt
2341 tcagtatgta tcctccagct cttaaagctt acctgagaaa gctttaaatg agaaaaggac
2401 catgcgattg gtgctgtgtt acatacacat actttcttgg cttctgagta gctcaggtgt
2461 ggcttttggc tgcagatgtt aaattttgat accatgtaaa cctacccagc ttctcagact
2521 tgggtcttgt tttttgatgg gaacagaggt gtttagagaa agcctctgag tatgcctttc
2581 agattttgaa caagcggcct tttctaaaca tcgacttcta ctactctcta gccttaaaat
2641 accttctgct tagatccagg gcccttctac tggagatagg aaaagtagaa ttcaggaatt
2701 aaaagaatta ctctttattc aatttgagga acttggtgaa agcccctcct cttatgacag
2761 ccaggttcct gctggctaga ccagcctatt cagcgctttg ctaggggatt gggtggtcca
2821 cgcactcgct aatacagttc tccaggtgtg gaatgatgtc aatacgattg cttggccttt
2881 tccccctgtg cctttgctcg gtgctctggt ttcctcagca acactccttg taaggggcag
2941 agacagggtc caccaactcc ccaagatgaa gaagcccctt caggccagtc gtggtggctc
3001 atgcctgtaa tcccagcact ttgcaaggcc gaggagggtg gatcacttga ggtcaggagt
3061 tcgagaccag cctgaccaac atggcgaaac cccatctcta ctaaaaatac aaaaattagc
3121 ttggcatggt ggtgcgtgcc tgtaatccca gctactcggg aggctggggc aggagaattg
3181 cttgaacttg ggagatggag gctgcagcga gccaagatcg tgccactgca ctccagcctg
3241 ggcaagagtt tttttaagac tcttaaaaaa agagcctggg caattttttt aagactctgt
3301 cttaaaaaaa actaaaaaaa aaaaaaaaaa a
//