LOCUS BC075835 1770 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens signal-regulatory protein beta 1, mRNA (cDNA clone
IMAGE:5483064), complete cds.
ACCESSION BC075835
VERSION BC075835.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1770)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1770)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUL-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 58 Row: g Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5174678
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1770
/db_xref="H-InvDB:HIT000265649"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5483064"
/tissue_type="Skin, melanoma, amelanotic"
/clone_lib="NIH_MGC_41"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1770
/gene="SIRPB1"
/gene_synonym="CD172b"
/gene_synonym="SIRP-BETA-1"
/db_xref="GeneID:10326"
/db_xref="HGNC:HGNC:15928"
/db_xref="MIM:603889"
CDS 53..598
/gene="SIRPB1"
/gene_synonym="CD172b"
/gene_synonym="SIRP-BETA-1"
/codon_start=1
/product="SIRPB1 protein"
/protein_id="AAH75835.1"
/db_xref="GeneID:10326"
/db_xref="HGNC:HGNC:15928"
/db_xref="MIM:603889"
/translation="MPVPASWPHLPSPFLLMTLLLGRLTGVAGEDELQVIQPEKSVSV
AAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLD
FSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVREPALAPTAPLLVALLL
GPKLLLVVGVSAIYICWKQKA"
BASE COUNT 461 a 533 c 349 g 427 t
ORIGIN
1 cgatcttccc agcacagacg tttggacaga gcaggctcct aaggtctcca gaatgcccgt
61 gccagcctcc tggccccacc ttcctagtcc tttcctgctg atgacgctac tgctggggag
121 actcacagga gtggcaggtg aggacgagct acaggtgatt cagcctgaaa agtccgtatc
181 agttgcagct ggagagtcgg ccactctgcg ctgtgctatg acgtccctga tccctgtggg
241 gcccatcatg tggtttagag gagctggagc aggccgggaa ttaatctaca atcagaaaga
301 aggccacttc ccacgggtaa caactgtttc agaactcaca aagagaaaca acctggactt
361 ttccatcagc atcagtaaca tcaccccagc agacgccggc acctactact gtgtgaagtt
421 ccggaaaggg agccctgacg acgtggagtt taagtctgga gcaggcactg agctgtctgt
481 gcgcgaacca gcgctggctc ctactgctcc actcctcgta gctctcctcc tgggccccaa
541 gctgctactg gtggttggtg tctctgccat ctacatctgc tggaaacaga aggcctgact
601 gaccctcagt ctctgctgcc tcctcctttc ttgagaagct cagcctgaga gaaggagctg
661 gcgagaacct tccccacact cagctccaaa cgcctcctct cccaggtcat ctgcctgccc
721 acacgctcct gttccacctt cacaagacca tgatgcccca aagcagtgtc tctattcacg
781 gtcctgagca ggggccatgg gattgggctc tgggcactga ctcatggcac ctccctagaa
841 ggtgagaaac actccaaatc taaacacacc aggacttctc ccatccgtcg ccttgggact
901 ggccataaac cacagactct ctccaggctc tcaagagtta tcctgtcttc tggattcctg
961 cctaccccaa ctcccccagc cttgttgagg ttctctactg cctcctgaat acacatgaac
1021 ccctatacca attttaagaa aaaaatgatt ctctttcctc tttgtccaag catcctatcc
1081 ctcaaaccca aaaagaaaga agctctccct tctctctctg tgatggggac agtatttctt
1141 ctagtatcct gcagccttcc cagtcctgct gcttgtggta gaaatgctgc cacagcccaa
1201 cattgaggag ccctcgatga ctgcccttta caactcatat tcagttctgc ctccaaaatg
1261 catgtgtcca cttacgtgag atggtaaatg tttaacaatg gactttctga aagggaaaaa
1321 ccaaaagctg ttttgcagtg cttgccaatt tctctagtgt aataactccc aacctgacca
1381 atttcacact gccaacagtt aaacaaccag attgcaagat tcctgaaatt taacaattgg
1441 ttttcagggc ccagtccaag cctgctgctg gaaacctcag agttaaatcc ctattctcca
1501 cacctctcac ctccaccacc cctccctgtc ccagccagca tcatctcttt ggggaccact
1561 cctctggctt tcatttttca gccacagtga ttctttggaa aagtcaaatc atatcacttc
1621 tctgcttctt ccccaacaca gctgcatggc tcccgctctc cctccttcaa gtctctgctc
1681 aatgtcactt cattaaaggc accttctata aactaaaaaa aaaaaaaaaa aaaaaaaaaa
1741 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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