LOCUS BC073977 1165 bp mRNA linear HUM 27-JUL-2004 DEFINITION Homo sapiens major histocompatibility complex, class II, DQ alpha 1, mRNA (cDNA clone MGC:87852 IMAGE:6014803), complete cds. ACCESSION BC073977 VERSION BC073977.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1165) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1165) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (23-JUN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 174 Row: f Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18426974. FEATURES Location/Qualifiers source 1..1165 /db_xref="H-InvDB:HIT000265198" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:87852 IMAGE:6014803" /tissue_type="Testis, embryonal carcinoma" /clone_lib="NIH_MGC_92" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1165 /gene="HLA-DQA1" /gene_synonym="CELIAC1" /gene_synonym="DQA1" /gene_synonym="HLA-DQ" /gene_synonym="HLA-DQA" /db_xref="GeneID:3117" /db_xref="MIM:146880" CDS 35..799 /gene="HLA-DQA1" /gene_synonym="CELIAC1" /gene_synonym="DQA1" /gene_synonym="HLA-DQ" /gene_synonym="HLA-DQA" /codon_start=1 /product="HLA-DQA1 protein" /protein_id="AAH73977.1" /db_xref="GeneID:3117" /db_xref="MIM:146880" /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGP SGQFTHEFDGDEQFYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKR YNSTAATNEVPEVTVFSKSPVTLGQPNTLICLDNIFPPVVNITWLSNGHAVTEGVSET SFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETV VCALGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL" BASE COUNT 292 a 307 c 261 g 305 t ORIGIN 1 gaacaccaac tgctgaggct gccttgggaa gaggatgatc ctaaacaaag ctctgctgct 61 gggggccctc gctctgacca ccgtgatgag cccctgtgga ggtgaagaca ttgtggctga 121 ccatgttgcc tcttgtggtg taaacttgta ccagttttac ggtccctctg gccagttcac 181 ccatgaattt gatggagatg agcagttcta cgtggacctg gagaagaagg agactgcctg 241 gcggtggcct gagttcagca aatttggagg ttttgacccg cagggtgcac tgagaaacat 301 ggctgtggca aaacacaact tgaacatcat gattaaacgc tacaactcta ccgctgctac 361 caatgaggtt cctgaggtca cagtgttttc caagtctccc gtgacactgg gtcagcccaa 421 caccctcatc tgtctggaca acatctttcc tcctgtggtc aacatcacat ggctgagcaa 481 tgggcacgca gtcacagaag gtgtttctga gaccagcttc ctctccaaga gtgatcattc 541 cttcttcaag atcagttacc tcaccttcct cccttctgct gatgagattt atgactgcaa 601 ggtggagcac tggggcctgg accagcctct tctgaaacac tgggagcctg agattccagc 661 ccctatgtca gagctcacag agactgtggt ctgtgccctg gggttgtctg tgggcctcgt 721 gggcattgtg gtgggcactg tcttcatcat ccaaggcctg cgttcagttg gtgcttccag 781 acaccaaggg cccttgtgaa tcccatcctg gaagggaagg tgcatcgcca tctacaggaa 841 cagaagaatg gacttgctaa atgacctagc actattctct ggcccgattt atcatatccc 901 ttttctcctc caaatgtttc tcctctcacc ttttctctgg gacttaagct gctatatccc 961 ctcagagctc acaaatgcct ttacattctt tccctgacct cctgattttt tttttctttt 1021 ctcaaatgtt acctacaaag acatgcctgg ggtaagccac ccggctccct aattcctcag 1081 taacctccat ctaaaatctc caaggaagca ataaattcct tttatgagaa aaaaaaaaaa 1141 aaaaaaaaaa aaaaaaaaaa aaaaa //