LOCUS BC073977 1165 bp mRNA linear HUM 27-JUL-2004
DEFINITION Homo sapiens major histocompatibility complex, class II, DQ alpha
1, mRNA (cDNA clone MGC:87852 IMAGE:6014803), complete cds.
ACCESSION BC073977
VERSION BC073977.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1165)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1165)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (23-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: f Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18426974.
FEATURES Location/Qualifiers
source 1..1165
/db_xref="H-InvDB:HIT000265198"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87852 IMAGE:6014803"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1165
/gene="HLA-DQA1"
/gene_synonym="CELIAC1"
/gene_synonym="DQA1"
/gene_synonym="HLA-DQ"
/gene_synonym="HLA-DQA"
/db_xref="GeneID:3117"
/db_xref="MIM:146880"
CDS 35..799
/gene="HLA-DQA1"
/gene_synonym="CELIAC1"
/gene_synonym="DQA1"
/gene_synonym="HLA-DQ"
/gene_synonym="HLA-DQA"
/codon_start=1
/product="HLA-DQA1 protein"
/protein_id="AAH73977.1"
/db_xref="GeneID:3117"
/db_xref="MIM:146880"
/translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGP
SGQFTHEFDGDEQFYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKR
YNSTAATNEVPEVTVFSKSPVTLGQPNTLICLDNIFPPVVNITWLSNGHAVTEGVSET
SFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETV
VCALGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL"
BASE COUNT 292 a 307 c 261 g 305 t
ORIGIN
1 gaacaccaac tgctgaggct gccttgggaa gaggatgatc ctaaacaaag ctctgctgct
61 gggggccctc gctctgacca ccgtgatgag cccctgtgga ggtgaagaca ttgtggctga
121 ccatgttgcc tcttgtggtg taaacttgta ccagttttac ggtccctctg gccagttcac
181 ccatgaattt gatggagatg agcagttcta cgtggacctg gagaagaagg agactgcctg
241 gcggtggcct gagttcagca aatttggagg ttttgacccg cagggtgcac tgagaaacat
301 ggctgtggca aaacacaact tgaacatcat gattaaacgc tacaactcta ccgctgctac
361 caatgaggtt cctgaggtca cagtgttttc caagtctccc gtgacactgg gtcagcccaa
421 caccctcatc tgtctggaca acatctttcc tcctgtggtc aacatcacat ggctgagcaa
481 tgggcacgca gtcacagaag gtgtttctga gaccagcttc ctctccaaga gtgatcattc
541 cttcttcaag atcagttacc tcaccttcct cccttctgct gatgagattt atgactgcaa
601 ggtggagcac tggggcctgg accagcctct tctgaaacac tgggagcctg agattccagc
661 ccctatgtca gagctcacag agactgtggt ctgtgccctg gggttgtctg tgggcctcgt
721 gggcattgtg gtgggcactg tcttcatcat ccaaggcctg cgttcagttg gtgcttccag
781 acaccaaggg cccttgtgaa tcccatcctg gaagggaagg tgcatcgcca tctacaggaa
841 cagaagaatg gacttgctaa atgacctagc actattctct ggcccgattt atcatatccc
901 ttttctcctc caaatgtttc tcctctcacc ttttctctgg gacttaagct gctatatccc
961 ctcagagctc acaaatgcct ttacattctt tccctgacct cctgattttt tttttctttt
1021 ctcaaatgtt acctacaaag acatgcctgg ggtaagccac ccggctccct aattcctcag
1081 taacctccat ctaaaatctc caaggaagca ataaattcct tttatgagaa aaaaaaaaaa
1141 aaaaaaaaaa aaaaaaaaaa aaaaa
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