LOCUS BC073872 1816 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens opsin 3, mRNA (cDNA clone IMAGE:4452104), complete
cds.
ACCESSION BC073872
VERSION BC073872.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1816)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1816)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 166 Row: d Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7657070
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1816
/db_xref="H-InvDB:HIT000265096"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4452104"
/tissue_type="Kidney, hypernephroma"
/clone_lib="NIH_MGC_89"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1816
/gene="OPN3"
/db_xref="GeneID:23596"
/db_xref="HGNC:HGNC:14007"
/db_xref="MIM:606695"
CDS 71..499
/gene="OPN3"
/codon_start=1
/product="opsin 3"
/protein_id="AAH73872.1"
/db_xref="GeneID:23596"
/db_xref="HGNC:HGNC:14007"
/db_xref="MIM:606695"
/translation="MYSGNRSGGHGYWDGGGAAGAEGPAPAGTLSPAPLFSPGTYERL
ALLLGSIGLLGVGNNLLVLVLYYKFQRLRTPTHLLLVNISLSDLLVSLFGVTFTFVSC
LRNGWVWDTVGCVWDGFSGSLFASLCGRSSDNSSDQDFKI"
BASE COUNT 477 a 436 c 403 g 500 t
ORIGIN
1 gtgcggagcg cgccgcgacc cccgccgcaa gctgagcgcc tccgcccgcc aggcgcgccg
61 gcgccgggcc atgtactcgg ggaaccgcag cggcggccac ggctactggg acggcggcgg
121 ggccgcgggc gctgaggggc cggcgccggc ggggacactg agccccgcgc ccctcttcag
181 ccccggcacc tacgagcgcc tggcgctgct gctgggctcc attgggctgc tgggcgtcgg
241 caacaacctg ctggtgctcg tcctctacta caagttccag cggctccgca ctcccactca
301 cctcctcctg gtcaacatca gcctcagcga cctgctggtg tccctcttcg gggtcacctt
361 taccttcgtg tcctgcctga ggaacggctg ggtgtgggac accgtgggct gcgtgtggga
421 cgggtttagc ggcagcctct tcgcttcgtt gtgtggaaga tcttcagaca attcaagtga
481 tcaagatttt aaaatatgaa aagaaactgg ccaaaatgtg ctttttaatg atattcacct
541 tcctggtctg ttggatgcct tatatcgtga tctgcttctt ggtggttaat ggtcatggtc
601 acctggtcac tccaacaata tctattgttt cgtacctctt tgctaaatcg aacactgtat
661 acaatccagt gatttatgtc ttcatgatca gaaagtttcg aagatccctt ttgcagcttc
721 tgtgcctccg actgctgagg tgccagaggc ctgctaaaga cctaccagca gctggaagtg
781 aaatgcagat cagacccatt gtgatgtcac agaaagatgg ggacaggcca aagaaaaaag
841 tgactttcaa ctcttcttcc atcattttta tcatcaccag tgatgaatca ctgtcagttg
901 acgacagcga caaaaccaat gggtccaaag ttgatgtaat ccaagttcgt cctttgtagg
961 aatgaagaat ggcaacgaaa gatggggcct taaattggat gccacttttg gactttcatc
1021 ataagaagtg tctggaatac ccgttctatg taatatcaac agaaccttgt ggtccagcag
1081 gaaatccgaa ttgcccatat gctcttgggc ctcaggaaga ggttgaacaa aaacaaattc
1141 ttttaattca acgggtgctt tacataatga aaaaaccact tgtggcacac gatgggcatc
1201 taacatcatc atcttctaat gtgttggaga ttttcatttc aaatatattt tttaaattac
1261 tctattttcc aaaacacgtt aatgcatttt tctcgaaaat accttactgt aaaaataact
1321 gtcgcgtaca catgtgtgaa gtagctagaa catactgaat tttttttgta ctgttggact
1381 ctattcagtg tcatgtccta tatctgatca agttatcaag gagataattc tagaatgaaa
1441 aagaaaatcc tcttgttgga aacaaaagac gttttatatg tgcagtatga caaagaggag
1501 tttcagagac aactttgaat ccttgtcagc ctggagacca gcaccagagg aatctacaag
1561 gcaaactccc atatatttgc ttcccccaaa ttgctgcccc tacagactca aagctctttt
1621 tctttgtttt gttgtttctc taaaaattta ctgttctttg tcgatgctat ataagccagg
1681 gagttctaag acgccagctc tttgagattt gctcattccc ctgtatttcc cacatatata
1741 ttacacatac ccgctaataa atttatgttt gtttttctct tgtcaaaaaa aaaaaaaaaa
1801 aaaaaaaaaa aaaaaa
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