LOCUS BC073164 1240 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens coiled-coil domain containing 80, mRNA (cDNA clone
IMAGE:6179924), partial cds.
ACCESSION BC073164
VERSION BC073164.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1240)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1240)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: l Column: 8.
FEATURES Location/Qualifiers
source 1..1240
/db_xref="H-InvDB:HIT000264959"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6179924"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1240
/gene="CCDC80"
/gene_synonym="DRO1"
/gene_synonym="SSG1"
/gene_synonym="URB"
/db_xref="GeneID:151887"
/db_xref="HGNC:HGNC:30649"
/db_xref="MIM:608298"
CDS <1..996
/gene="CCDC80"
/gene_synonym="DRO1"
/gene_synonym="SSG1"
/gene_synonym="URB"
/codon_start=1
/product="CCDC80 protein"
/protein_id="AAH73164.1"
/db_xref="GeneID:151887"
/db_xref="HGNC:HGNC:30649"
/db_xref="MIM:608298"
/translation="EGKRRLLLITAPKAENNMYVQQRDEYLESFCKMATRKISVITIF
GPVNNSTMKIDHFQLDNEKPMRVVDDEDLVDQRLISELRKEYGMTYNDFFMVLTDVDL
RVKQYYEVPITMKSVFDLIDTFQSRIKDMEKQKKEGIVCKEDKKQSLENFLSRFRWRR
RLLVISAPNDEDWAYSQQLSALSGQACNFGLRHITILKLLGVGEEVGGVLELFPINGG
SVVEREDVPAHLVKDIRNYFQVSPEYFSMLLVGKDGNVKSWYPSPMWSMVIVYDLIDS
MQLRRQEMAIQQSLGMRCPEDEYAGYGYHSYHQGYQDGYQDDYRHHESYHHGYPY"
BASE COUNT 415 a 252 c 278 g 295 t
ORIGIN
1 gaaggcaaac gaagactcct tctgatcact gctcccaagg ctgagaacaa tatgtatgtg
61 caacaacgtg atgaatatct ggaaagtttc tgcaagatgg ctaccaggaa aatctctgtg
121 atcaccatct tcggccctgt caacaacagc accatgaaaa tcgaccactt tcagctagat
181 aatgagaagc ccatgcgagt ggtggatgat gaagacttgg tagaccagcg tctcatcagc
241 gagctgagga aagagtacgg aatgacctac aatgacttct tcatggtgct aacagatgtg
301 gatctgagag tcaagcaata ctatgaggta ccaataacaa tgaagtctgt gtttgatctg
361 atcgatactt tccagtcccg aatcaaagat atggagaagc agaagaagga gggcattgtt
421 tgcaaagagg acaaaaagca gtccctggag aacttcctat ccaggttccg gtggaggagg
481 aggttgctgg tgatctctgc tcctaacgat gaagactggg cctattcaca gcagctctct
541 gccctcagtg gtcaggcgtg caattttggt ctgcgccaca taaccattct gaagctttta
601 ggcgttggag aggaagttgg gggagtgtta gaactgttcc caattaatgg gggctctgtt
661 gttgagcgag aagacgtacc agcccatttg gtgaaagaca ttcgtaacta ttttcaagtg
721 agcccggagt acttctccat gcttctagtc ggaaaagacg gaaatgtcaa atcctggtat
781 ccttccccaa tgtggtccat ggtgattgtg tacgatttaa ttgattcgat gcaacttcgg
841 agacaggaaa tggcgattca gcagtcactg gggatgcgct gcccagaaga tgagtatgca
901 ggctatggtt accatagtta ccaccaagga taccaggatg gttaccagga tgactaccgt
961 catcatgaga gttatcacca tggataccct tactgagcag aaatatgtaa ccttagactc
1021 agccagtttc ctctgcagct gctaaaacta catgtggcca gctccattct tccacactgc
1081 gtactacatt tcctgccttt ttctttcagt gtttttctaa gactaaataa atagcaaact
1141 ttcacctaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1201 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//