LOCUS BC072668 2107 bp mRNA linear HUM 25-JUN-2004
DEFINITION Homo sapiens SRY (sex determining region Y)-box 4, mRNA (cDNA clone
MGC:71240 IMAGE:6584346), complete cds.
ACCESSION BC072668
VERSION BC072668.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2107)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2107)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: o Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4507162.
FEATURES Location/Qualifiers
source 1..2107
/db_xref="H-InvDB:HIT000264907"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71240 IMAGE:6584346"
/tissue_type="Ovary, teratocarcinoma"
/clone_lib="NIH_MGC_109"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2107
/gene="SOX4"
/gene_synonym="EVI16"
/db_xref="GeneID:6659"
/db_xref="MIM:184430"
CDS 615..2039
/gene="SOX4"
/gene_synonym="EVI16"
/codon_start=1
/product="SOX4 protein"
/protein_id="AAH72668.1"
/db_xref="GeneID:6659"
/db_xref="MIM:184430"
/translation="MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGG
KADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKD
SDKIPFIREAERLRLKHMADYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGG
SGGGGHGGGGGGGSSNAGGGGGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKL
ILAGGGGGGKAAAAAAASFAAEQAGAAALLPLGAAADHHSLYKARTPSASASASSAAS
ASAALAAPGKHLAEKKVKRVYLFGGLGTSSSPVGGVGAGADPSDPLGLYEEEGAGCSP
DAPSLSGRSSAASSPAAGRSPADHRGYASLRAASPAPSSAPSHASSSASSHSSSSSSS
GSSSSDDEFEDDLLDLNPSSNFESMSLGSFSSSSALDRDLDFNFEPGSGSHFEFPDYC
TPEVSEMISGDWLESSISNLVFTY"
BASE COUNT 424 a 699 c 669 g 315 t
ORIGIN
1 ctgcactgga ggaactcctg ccattaccag ctcccttctt gcagaaggga gggggaaaca
61 tacatttatt catgccagtc tgttgcatgc aggctttttg gcttcctacc ttgcaacaaa
121 ataattgcac caactcctta gtgccgattc cgcccacaga gagtcctgga gccacagtct
181 tttttgcttt gcattgtagg agagggacta agtgctagag actatgtcgc tttcctgagc
241 taccgagagc gctcgtgaac tggaatcaac tgcttcaggg aaaaagaaaa aaaaaaaaaa
301 aagacttgcc tgggaggccg cgagaaactt gcattggaag cttcagcaac cagcattcga
361 gaaactcctc tctactttag cacggtctcc agactcagcc gagagacagc aaactgcagc
421 gcggtgagag agcgagagag agggagagag agactctcca gcctgggaac tataactcct
481 ctgcgagagg cggagaactc cttccccaaa tcttttgggg acttttctct ctttacccac
541 ctccgcccct gcgaggagtt gaggcggccg ccgcgagggt gtgagcgcgc gtgggcgccc
601 gccgagccga ggccatggtg cagcaaacca acaatgccga gaacacggaa gcgctgctgg
661 ccggcgagag ctcggactcg ggcgccggcc tcgagctggg aatcgcctcc tcccccacgc
721 ccggctccac cgcctccacg ggcggcaagg ccgacgaccc gagctggtgc aagaccccga
781 gtgggcacat caagcgaccc atgaacgcct tcatggtgtg gtcgcagatc gagcggcgca
841 agatcatgga gcagtcgccc gacatgcaca acgccgagat ctccaagcgg ctgggcaaac
901 gctggaagct gctcaaagac agcgacaaga tccctttcat tcgagaggcg gagcggctgc
961 gcctcaagca catggctgac taccccgact acaagtaccg gcccaggaag aaggtgaagt
1021 ccggcaacgc caactccagc tcctcggccg ccgcctcctc caagccgggg gagaagggag
1081 acaaggtcgg tggcagtggc gggggcggcc atgggggcgg cggcggcggc gggagcagca
1141 acgcgggggg aggaggcggc ggtgcgagtg gcggcggcgc caactccaaa ccggcgcaga
1201 aaaagagctg cggctccaaa gtggcgggcg gcgcgggcgg tggggttagc aaaccgcacg
1261 ccaagctcat cctggcaggc ggcggcggcg gcgggaaagc agcggctgcc gccgccgcct
1321 ccttcgccgc cgaacaggcg ggggccgccg ccctgctgcc cctgggcgcc gccgccgacc
1381 accactcgct gtacaaggcg cggactccca gcgcctcggc ctccgcctcc tcggcagcct
1441 cggcctccgc agcgctcgcg gccccgggca agcacctggc ggagaagaag gtgaagcgcg
1501 tctacctgtt cggcggcctg ggcacgtcgt cgtcgcccgt gggcggcgtg ggcgcgggag
1561 ccgaccccag cgaccccctg ggcctgtacg aggaggaggg cgcgggctgc tcgcccgacg
1621 cgcccagcct gagcggccgc agcagcgccg cctcgtcccc cgccgccggc cgctcgcccg
1681 ccgaccaccg cggctacgcc agcctgcgcg ccgcctcgcc cgccccgtcc agcgcgccct
1741 cgcacgcgtc ctcctcggcc tcgtcccact cctcctcttc ctcctcctcg ggctcctcgt
1801 cctccgacga cgagttcgaa gacgacctgc tcgacctgaa ccccagctca aactttgaga
1861 gcatgtccct gggcagcttc agttcgtcgt cggcgctcga ccgggacctg gattttaact
1921 tcgagcccgg ctccggctcg cacttcgagt tcccggacta ctgcacgccc gaggtgagcg
1981 agatgatctc gggagactgg ctcgagtcca gcatctccaa cctggttttc acctactgaa
2041 gggcgcgcag gcagggagaa gggccggggg gggtaggaga ggagaaaaaa aaaaaaaaaa
2101 aaaaaaa
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