LOCUS BC072458 1315 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens period homolog 1 (Drosophila), mRNA (cDNA clone
IMAGE:6200422), complete cds.
ACCESSION BC072458
VERSION BC072458.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1315)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1315)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: o Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4505712
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1315
/db_xref="H-InvDB:HIT000264902"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6200422"
/tissue_type="Peripheral Nervous System, sympathetic
trunk"
/clone_lib="Lupski_sympathetic_trunk"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1315
/gene="PER1"
/gene_synonym="hPER"
/gene_synonym="PER"
/gene_synonym="RIGUI"
/db_xref="GeneID:5187"
/db_xref="MIM:602260"
CDS 152..1036
/gene="PER1"
/gene_synonym="hPER"
/gene_synonym="PER"
/gene_synonym="RIGUI"
/codon_start=1
/product="PER1 protein"
/protein_id="AAH72458.1"
/db_xref="GeneID:5187"
/db_xref="MIM:602260"
/translation="MSGPLEGADGGGDPRPGESFCPGGVPSPGPPQHRPCPGPSLADD
TDANSNGSSGNESNGHESRGASQRSSHSSSSGNGKDSALLETTESSKSTNSQSPSPPS
SSIAYSLLSASSEQDNPSTSGCSSEQSARARTQKELMTALRELKLRLPPERRGKGRSG
TLATLQYALACVKQVQANQEYYQQWSLEEGEPCSMDMSTYTLEELEHITSEYTLQNQD
TFSVAVSFLTGRIVYISEQAAVLLRCKRDVFRGTRFSELLAPQDVGVFYGSTAPSRLP
TWGTGASAGEVPKRCGEA"
BASE COUNT 299 a 407 c 366 g 243 t
ORIGIN
1 gcgcgccgag cggtactggc tgtgatcgaa cttctcaacc ctcagagact tagatcttcc
61 acctcactcc ctcagccaag cctccaggcc ccctcgtgca tccgtggtgg cctctctgcc
121 ttctctgttc tgttctcccc atggcccaga catgagtggc cccctagaag gggctgatgg
181 gggaggggac cccaggcctg gggaatcatt ttgtcctggg ggcgtcccat cccctgggcc
241 cccacagcac cggccttgcc caggccccag cctggccgat gacaccgatg ccaacagcaa
301 tggttcaagt ggcaatgagt ccaacgggca tgagtctaga ggcgcatctc agcggagctc
361 acacagctcc tcctcaggca acggcaagga ctcagccctg ctggagacca ctgagagcag
421 caagagcaca aactctcaga gcccatcccc acccagcagt tccattgcct acagcctcct
481 gagtgccagc tcagagcagg acaacccgtc caccagtggc tgcagcagtg aacagtcagc
541 ccgggcaagg actcagaagg aactcatgac agcacttcga gagctcaagc ttcgactgcc
601 gccagagcgc cggggcaagg gccgctctgg gaccctggcc acgctgcagt acgcactggc
661 ctgtgtcaag caggtgcagg ccaaccagga atactaccag cagtggagcc tggaggaggg
721 cgagccttgc tccatggaca tgtccaccta taccctggag gagctggagc acatcacgtc
781 tgagtacaca cttcagaacc aggatacctt ctcagtggct gtctccttcc tgacgggccg
841 aatcgtctac atttcggagc aggcagccgt cctgctgcgt tgcaagcggg acgtgttccg
901 gggtacccgc ttctctgagc tcctggctcc ccaggatgtg ggagtcttct atggttccac
961 tgctccatct cgcctgccca cctggggcac aggggcctca gcaggtgagg tgcccaagcg
1021 ctgtggggag gcatgagcag tcccaggaaa ttcctgctgt gaggggccgg ggaacccaga
1081 ctttccctta gtggattctt cgcagcctag ggaaggggca ggaagctgtg ctcactcctc
1141 tcctgtctgt cccaggttca ggcctcaggg actttaccca ggagaattcc ttgaacctgg
1201 gaggcagagg ttgcagtgaa ctgatagtgc tgctgcactc cattctgggc aagagctaga
1261 ctcttgtcta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
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