LOCUS BC072008 1296 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 4, mRNA (cDNA clone MGC:88714 IMAGE:6285035), complete cds. ACCESSION BC072008 VERSION BC072008.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1296) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1296) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: CGAP (Stanford) cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 58 Row: k Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 5292160. FEATURES Location/Qualifiers source 1..1296 /db_xref="H-InvDB:HIT000264812" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:88714 IMAGE:6285035" /tissue_type="Liver, hepatocellular carcinoma" /clone_lib="NIH_MGC_100" /lab_host="DH10B" /note="Vector: pOTB7" gene 1..1296 /gene="PSMD4" /gene_synonym="AF" /gene_synonym="AF-1" /gene_synonym="ASF" /gene_synonym="MCB1" /gene_synonym="pUB-R5" /gene_synonym="Rpn10" /gene_synonym="S5A" /db_xref="GeneID:5710" /db_xref="HGNC:HGNC:9561" /db_xref="MIM:601648" CDS 27..1160 /gene="PSMD4" /gene_synonym="AF" /gene_synonym="AF-1" /gene_synonym="ASF" /gene_synonym="MCB1" /gene_synonym="pUB-R5" /gene_synonym="Rpn10" /gene_synonym="S5A" /codon_start=1 /product="proteasome (prosome, macropain) 26S subunit, non-ATPase, 4" /protein_id="AAH72008.1" /db_xref="GeneID:5710" /db_xref="HGNC:HGNC:9561" /db_xref="MIM:601648" /translation="MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSN PENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQG KNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTL NGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDFEFGVDPSADPELAL ALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGLP DLSSMTEEEQIAYAMQMSLQGAEFGQAESADIDASSAMDTSEPAKEEDDYDVMQDPEF LQSVLENLPGVDPNNEAIRNAMGSLASQATKDGKKDKKEEDKK" BASE COUNT 352 a 296 c 383 g 265 t ORIGIN 1 cggtcgggag ggaggaaggt ggcaagatgg tgttggaaag cactatggtg tgtgtggaca 61 acagtgagta tatgcggaat ggagacttct tacccaccag gctgcaggcc cagcaggatg 121 ctgtcaacat agtttgtcat tcaaagaccc gcagcaaccc tgagaacaac gtgggcctta 181 tcacactggc taatgactgt gaagtgctga ccacactcac cccagacact ggccgtatcc 241 tgtccaagct acatactgtc caacccaagg gcaagatcac cttctgcacg ggcatccgcg 301 tggcccatct ggctctgaag caccgacaag gcaagaatca caagatgcgc atcattgcct 361 ttgtgggaag cccagtggag gacaatgaga aggatctggt gaaactggct aaacgcctca 421 agaaggagaa agtaaatgtt gacattatca attttgggga agaggaggtg aacacagaaa 481 agctgacagc ctttgtaaac acgttgaatg gcaaagatgg aaccggttct catctggtga 541 cagtgcctcc tgggcccagt ttggctgatg ctctcatcag ttctccgatt ttggctggtg 601 aaggtggtgc catgctgggt cttggtgcca gtgactttga atttggagta gatcccagtg 661 ctgatcctga gctggccttg gcccttcgtg tatctatgga agagcagcgg cagcggcagg 721 aggaggaggc ccggcgggca gctgcagctt ctgctgctga ggccgggatt gctacgactg 781 ggactgaaga ctcagacgat gccctgctga agatgaccat cagccagcaa gagtttggcc 841 gcactgggct tcctgaccta agcagtatga ctgaggaaga gcagattgct tatgccatgc 901 agatgtccct gcagggagca gagtttggcc aggcggaatc agcagacatt gatgccagct 961 cagctatgga cacatctgag ccagccaagg aggaggatga ttacgacgtg atgcaggacc 1021 ccgagttcct tcagagtgtc ctagagaacc tcccaggtgt ggatcccaac aatgaagcca 1081 ttcgaaatgc tatgggctcc ctggcctccc aggccaccaa ggacggcaag aaggacaaga 1141 aggaggaaga caagaagtga gactggaggg aaagggtagc tgagtctgct taggggactg 1201 catgggaagc acggaatata gggttagatg tgtgttatct gtaaccatta cagcctaaat 1261 aaagcttggc aacttttaaa aaaaaaaaaa aaaaaa //