LOCUS BC072003 1080 bp mRNA linear HUM 25-JUN-2004
DEFINITION Homo sapiens SRY (sex determining region Y)-box 15, mRNA (cDNA
clone MGC:88706 IMAGE:4653140), complete cds.
ACCESSION BC072003
VERSION BC072003.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1080)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1080)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 58 Row: d Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5902105.
FEATURES Location/Qualifiers
source 1..1080
/db_xref="H-InvDB:HIT000264808"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:88706 IMAGE:4653140"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1080
/gene="SOX15"
/gene_synonym="SOX20"
/gene_synonym="SOX26"
/gene_synonym="SOX27"
/db_xref="GeneID:6665"
/db_xref="MIM:601297"
CDS 149..850
/gene="SOX15"
/gene_synonym="SOX20"
/gene_synonym="SOX26"
/gene_synonym="SOX27"
/codon_start=1
/product="SOX15 protein"
/protein_id="AAH72003.1"
/db_xref="GeneID:6665"
/db_xref="MIM:601297"
/translation="MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTL
PLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEA
KRLRARHLRDYPDYKYRPRRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQPSRG
FGYRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTP
YNPPLAGAPMPLTHL"
BASE COUNT 235 a 374 c 291 g 180 t
ORIGIN
1 gggagaggtc tggcctatcc gcgcctggca gctgtcggaa ctccggagac cacaaagggg
61 tttatggttt accccctcca cggaaggatc gacgcttcac gttgagggga gggcattcag
121 gacgccctct taaggcttct cccaacccat ggcgctacca ggctcctcac aggaccaggc
181 ctggagcctg gagcctccgg ctgccacggc tgctgcctcc tcatcttcgg gaccccagga
241 gcgggagggc gctgggagcc ccgcggcccc cgggacgctg cccctggaga aggtgaagcg
301 gccgatgaac gcgttcatgg tgtggagctc cgctcagcgc cgccagatgg cgcagcagaa
361 ccccaagatg cacaactccg agatctccaa gcgcctgggc gcgcagtgga agctgctgga
421 cgaggacgag aagcggccct tcgtggagga ggccaagcgg ctccgcgccc gacacctgcg
481 cgactacccc gactacaagt accggcctcg gcgcaaggcc aagagctcgg gcgccggacc
541 ttcccgctgc ggacagggaa gaggcaacct ggccagcggc ggcccgctct gggggccggg
601 gtacgcgacc acccaaccga gcagaggctt tgggtacaga ccccccagct actcgacagc
661 ctacctgcct ggcagctatg gctcttccca ctgcaaactg gaagccccct caccgtgctc
721 cctccctcag agtgacccta ggctccaggg ggaactgctg cccacctata cccactacct
781 gccccctggc tctcccactc catacaaccc tccccttgct ggtgccccca tgcccctaac
841 ccacctctaa ccctcatgga cgcagacctc acgggacggg cctcatcctc cttttttaat
901 ccagcagcat cccctacccc aggctgtcaa ccctttctcc tgttggacta cagttcagag
961 gcagcctgca gtcctcccat gatagccagg gagagccgca caacatacaa ttatattttt
1021 ggtagtatta aacagttttg tattattcaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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