LOCUS BC071863 1483 bp mRNA linear HUM 25-JUN-2004
DEFINITION Homo sapiens high mobility group AT-hook 1, mRNA (cDNA clone
MGC:88532 IMAGE:4651720), complete cds.
ACCESSION BC071863
VERSION BC071863.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1483)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1483)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 58 Row: d Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22208974.
FEATURES Location/Qualifiers
source 1..1483
/db_xref="H-InvDB:HIT000264676"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:88532 IMAGE:4651720"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1483
/gene="HMGA1"
/gene_synonym="HMG-R"
/gene_synonym="HMGIY"
/gene_synonym="MGC12816"
/gene_synonym="MGC4242"
/gene_synonym="MGC4854"
/db_xref="GeneID:3159"
/db_xref="MIM:600701"
CDS 66..389
/gene="HMGA1"
/gene_synonym="HMG-R"
/gene_synonym="HMGIY"
/gene_synonym="MGC12816"
/gene_synonym="MGC4242"
/gene_synonym="MGC4854"
/codon_start=1
/product="HMGA1 protein"
/protein_id="AAH71863.1"
/db_xref="GeneID:3159"
/db_xref="MIM:600701"
/translation="MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPK
RPRGRPKGSKNKGAAKTRKTTTLHSTPAAAGLPWAEWGAVFPWPQFPAPPAHPRIHTC
PPGQG"
BASE COUNT 302 a 493 c 378 g 310 t
ORIGIN
1 ctggcgcggc tccaagaagg ccatcccagc catcactctt ccacctgctc cttagagaag
61 ggaagatgag tgagtcgagc tcgaagtcca gccagccctt ggcctccaag caggaaaagg
121 acggcactga gaagcggggc cggggcaggc cgcgcaagca gcctccgaag gagcccagcg
181 aagtgccaac acctaagaga cctcggggcc gaccaaaggg aagcaaaaac aagggtgctg
241 ccaagacccg gaaaaccacc acactacaca gcacaccagc cgctgcaggg ctcccatggg
301 ctgagtgggg agcagttttc ccctggcctc agttcccagc tccccccgcc cacccacgca
361 tacacacatg ccctcctgga caaggctaac atcccactta gccgcaccct gcacctgctg
421 cgtccccact cccttggtgg tggggacatt gctctctggg cttttggttt gggggcgccc
481 tctctgctcc ttcactgttc cctctggctt cccatagtgg ggcctgggag ggttcccctg
541 gccttaaaag gggcccaagc cccatctcat cctggcacgc cctactccac tgccctggca
601 gcagcaggtg tggccaatgg aggggggtgc tggcccccag gattccccca gccaaactgt
661 ctttgtcacc acgtggggct cacttttcat ccttccccaa cttccctagt ccccgtacta
721 ggttggacag cccccttcgg ctacaggaag gcaggagggg tgagtcccct actccctctt
781 cactgtggcc acagccccct tgccctccgc ctgggatctg agtacatatt gtggtgatgg
841 agatgcagtc acttattgtc caggtgaggc ccaagagccc tgtggccgcc acctgaggtg
901 ggctggggct gctcccctaa ccctactttg cttccgccac tcagccattt ccccctcctc
961 agatggggca ccaataacaa ggagctcacc ctgcccgctc ccaacccccc tcctgctcct
1021 ccctgccccc caaggttctg gttccatttt tcctctgttc acaaactacc tctggacagt
1081 tgtgttgttt tttgttcaat gttccattct tcgacatccg tcattgctgc tgctaccagc
1141 gccaaatgtt catcctcatt gcctcctgtt ctgcccacga tcccctcccc caagatactc
1201 tttgtgggga agaggggctg gggcatggca ggctgggtga ccgactaccc cagtcccagg
1261 gaaggtgggg ccctgcccct aggatgctgc agcagagtga gcaagggggc ccgaatcgac
1321 cataaagggt gtaggggcca cctcctcccc ctgttctgtt ggggaggggt agccatgatt
1381 tgtcccagcc tggggctccc tctctggttt cctatttgca gttacttgaa taaaaaaaat
1441 atccttttct ggaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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