LOCUS BC071846 2767 bp mRNA linear HUM 06-OCT-2005 DEFINITION Homo sapiens ATG16 autophagy related 16-like 1 (S. cerevisiae), mRNA (cDNA clone IMAGE:6651664), partial cds. ACCESSION BC071846 VERSION BC071846.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2767) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2767) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 58 Row: p Column: 18. FEATURES Location/Qualifiers source 1..2767 /db_xref="H-InvDB:HIT000264660" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6651664" /tissue_type="Breast, adenocarcinoma" /clone_lib="NIH_MGC_107" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..2767 /gene="ATG16L1" /gene_synonym="FLJ00045" /gene_synonym="FLJ10035" /gene_synonym="FLJ10828" /gene_synonym="FLJ22677" /gene_synonym="WDR30" /db_xref="GeneID:55054" /db_xref="HGNC:HGNC:21498" /db_xref="IMGT/GENE-DB:21498" /db_xref="MIM:21498" CDS <1..1430 /gene="ATG16L1" /gene_synonym="FLJ00045" /gene_synonym="FLJ10035" /gene_synonym="FLJ10828" /gene_synonym="FLJ22677" /gene_synonym="WDR30" /codon_start=3 /product="ATG16L1 protein" /protein_id="AAH71846.1" /db_xref="GeneID:55054" /db_xref="HGNC:HGNC:21498" /db_xref="IMGT/GENE-DB:21498" /db_xref="MIM:21498" /translation="NNQMQRKDREMQMNEAKIAECLQTISDLETECLDLRTKLCDLER ANQTLKDEYDALQITFTALEGKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRR RQARLQKELAEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVRAISRAATRRSVSSFP VPQDNVDTHPGSGKEVRVPATALCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWE VFGEKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHS GKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGH FDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQ TFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINA VAWSPSGSHVVSVDKGCKAVLWAQY" BASE COUNT 706 a 634 c 712 g 715 t ORIGIN 1 tgaataacca aatgcagcgg aaggacaggg agatgcagat gaatgaagca aaaattgcag 61 aatgtttgca gactatctct gacctggaga cggagtgcct agacctgcgc actaagcttt 121 gtgaccttga aagagccaac cagaccctga aggatgaata tgatgccctg cagatcactt 181 ttactgcctt ggagggaaaa ctgaggaaaa ctacggaaga gaaccaggag ctggtcacca 241 gatggatggc tgagaaagcc caggaagcca atcggcttaa tgcagagaat gaaaaagact 301 ccaggaggcg gcaagcccgg ctgcagaaag agcttgcaga agcagcaaag gaacctctac 361 cagtcgaaca ggatgatgac attgaggtca ttgtggatga aacttctgat cacacagaag 421 agacctctcc tgtgcgagcc atcagcagag cagccacgag acgctctgtc tcttccttcc 481 cagtccccca ggacaatgtg gatactcatc ctggttctgg taaagaagtg agggtaccag 541 ctactgcctt gtgtgtcttc gatgcacatg atggggaagt caacgctgtg cagttcagtc 601 caggttcccg gttactggcc actggaggca tggaccgcag ggttaagctt tgggaagtat 661 ttggagaaaa atgtgagttc aagggttccc tatctggcag taatgcagga attacaagca 721 ttgaatttga tagtgctgga tcttacctct tagcagcttc aaatgatttt gcaagccgaa 781 tctggactgt ggatgattat cgattacggc acacactcac gggacacagt gggaaagtgc 841 tgtctgctaa gttcctgctg gacaatgcgc ggattgtctc aggaagtcac gaccggactc 901 tcaaactctg ggatctacgc agcaaagtct gcataaagac agtgtttgca ggatccagtt 961 gcaatgatat tgtctgcaca gagcaatgtg taatgagtgg acattttgac aagaaaattc 1021 gtttctggga cattcgatca gagagcatag ttcgagagat ggagctgttg ggaaagatta 1081 ctgccctgga cttaaaccca gaaaggactg agctcctgag ctgctcccgt gatgacttgc 1141 taaaagttat tgatctccga acaaatgcta tcaagcagac attcagtgca cctgggttca 1201 agtgcggctc tgactggacc agagttgtct tcagccctga tggcagttac gtggcggcag 1261 gctctgctga gggctctctg tatatctgga gtgtgctcac agggaaagtg gaaaaggttc 1321 tttcaaagca gcacagctca tccatcaatg cggtggcgtg gtcgccctct ggctcgcacg 1381 ttgtcagtgt ggacaaagga tgcaaagctg tgctgtgggc acagtactga cggggctctc 1441 agggctggga ggaccccagt gccctcctca gaagaagcac atgggctcct gcagccctgt 1501 cctggcaggt gatgtgctgg gtatagcatg gacctcccag agaagctcaa gctatgtggc 1561 actgtagctt tgccgtgaat gggatttctg aagatttgac tgaggtctct cttggcctgg 1621 aagaataaca ctgaaaaaac ctgacgctgc ggtcacttag cagaggctca ggttcttgcc 1681 ttgggaaaca ctactagctc tgaccttcca tacctcactt gggggagcac agggccccgc 1741 tgggcctcct caccaacggc agtgccaaaa tcagccccca catcaaggtg gtgttctctg 1801 tgctttctct cgtccttcca aagtcggttc tggcctaacg catgtcccaa caccttgggt 1861 tcatttgccc ggtgaactca ctttaagcat tggattaacg gaaactcccg aactacagac 1921 ccctccctgg tgggttgcat gaatgtgtct cattactgct gaaatgtcct cacatctctt 1981 tcactgttct tcagagcttt ctggctctct ttcccccaca aaattcgaca tatttaaaaa 2041 tctccgtgtg gctttaaaaa atggtttttt gtttttttgt ttttttgagg tgggagagga 2101 tgtgtgaaaa tcttttccag ggaaatgggt tcgctgcaga ggtaaggatg tgttcctgta 2161 tcgatctgca gacacccaga aggtgggtgc acactgcatg cttgggggtg ccaagggatt 2221 cgagacctcc aacatacttg tctgaaggtg gtgattctgg ccatggcccc tctgccaagc 2281 ctgtgtgcga tgcccttggt gctttagtgc aagaagccta ggctcagaag cacagcagcg 2341 ccatctttcc gtttcagggg ttgtgatgaa ggccaaggaa aaacatttat ctttactatt 2401 ttacctacgt ataaagtttt agttcattgg gtgtgcgaaa cacccttttt atcactttta 2461 aatttgcact ttattttttt tcttccatgc ttgttctctg gacatttggg gatgtgagtg 2521 ttagagctgg tgagagagga gtcaggtggc cttcccaccg atggtcctgg cctccacctg 2581 ccctctcttc cctgcctgat caccgctttc caatttgccc ttcagagaac ttaagtcaag 2641 gagagttgaa attcacaggc cagggcacat cttttattta tttcattatg ttggccaaca 2701 gaacttgatt gtaaataata ataaagaaat ctgttatata cttttcaaaa aaaaaaaaaa 2761 aaaaaaa //