LOCUS BC071754 1859 bp mRNA linear HUM 07-AUG-2008
DEFINITION Homo sapiens CD40 ligand, mRNA (cDNA clone MGC:88303
IMAGE:30418744), complete cds.
ACCESSION BC071754
VERSION BC071754.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1859)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1859)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Narayan Bhat
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 57 Row: p Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 58331233.
FEATURES Location/Qualifiers
source 1..1859
/db_xref="H-InvDB:HIT000264574"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:88303 IMAGE:30418744"
/tissue_type="Blood, peripheral blood mononuclear cells
(PBMC) cytoplasmic poly A RNA is pooled sample from 3 and
6 hr after stimulation with PMA and Ionomycin. These
reagents are used to activate T- cells that results in
lymphokine and cytokine production."
/clone_lib="NIH_MGC_191"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1859
/gene="CD40LG"
/gene_synonym="CD154"
/gene_synonym="CD40L"
/gene_synonym="gp39"
/gene_synonym="hCD40L"
/gene_synonym="IGM"
/gene_synonym="T-BAM"
/gene_synonym="TRAP"
/db_xref="GeneID:959"
/db_xref="HGNC:HGNC:11935"
/db_xref="MIM:300386"
CDS 73..858
/gene="CD40LG"
/gene_synonym="CD154"
/gene_synonym="CD40L"
/gene_synonym="gp39"
/gene_synonym="hCD40L"
/gene_synonym="IGM"
/gene_synonym="T-BAM"
/gene_synonym="TRAP"
/codon_start=1
/product="CD40 ligand"
/protein_id="AAH71754.1"
/db_xref="GeneID:959"
/db_xref="HGNC:HGNC:11935"
/db_xref="MIM:300386"
/translation="MIETYNQTSPRSAATGLPISMKIFMYLLTVFLITQMIGSALFAV
YLHRRLDKIEDERNLHEDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFVKDIMLNK
EETKKENSFEMQKGDQNPQIAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQ
LTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGRFERILLRAANTHSSAKPC
GQQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL"
BASE COUNT 545 a 462 c 349 g 503 t
ORIGIN
1 actttgacag tcttctcatg ctgcctctgc caccttctct gccagaagat accatttcaa
61 ctttaacaca gcatgatcga aacatacaac caaacttctc cccgatctgc ggccactgga
121 ctgcccatca gcatgaaaat ttttatgtat ttacttactg tttttcttat cacccagatg
181 attgggtcag cactttttgc tgtgtatctt catagaaggt tggacaagat agaagatgaa
241 aggaatcttc atgaagattt tgtattcatg aaaacgatac agagatgcaa cacaggagaa
301 agatccttat ccttactgaa ctgtgaggag attaaaagcc agtttgaagg ctttgtgaag
361 gatataatgt taaacaaaga ggagacgaag aaagaaaaca gctttgaaat gcaaaaaggt
421 gatcagaatc ctcaaattgc ggcacatgtc ataagtgagg ccagcagtaa aacaacatct
481 gtgttacagt gggctgaaaa aggatactac accatgagca acaacttggt aaccctggaa
541 aatgggaaac agctgaccgt taaaagacaa ggactctatt atatctatgc ccaagtcacc
601 ttctgttcca atcgggaagc ttcgagtcaa gctccattta tagccagcct ctgcctaaag
661 tcccccggta gattcgagag aatcttactc agagctgcaa atacccacag ttccgccaaa
721 ccttgcgggc aacaatccat tcacttggga ggagtatttg aattgcaacc aggtgcttcg
781 gtgtttgtca atgtgactga tccaagccaa gtgagccatg gcactggctt cacgtccttt
841 ggcttactca aactctgaac agtgtcacct tgcaggctgt ggtggagctg acgctgggag
901 tcttcataat acagcacagc ggttaagccc accccctgtt aactgcctat ttataaccct
961 aggatcctcc ttatggagaa ctatttatta tacactccaa ggcatgtaga actgtaataa
1021 gtgaattaca ggtcacatga aaccaaaacg ggccctgctc cataagagct tatatatctg
1081 aagcagcaac cccactgatg cagacatcca gagagtccta tgaaaagaca aggccattat
1141 gcacaggttg aattctgagt aaacagcaga taacttgcca agttcagttt tgtttctttg
1201 cgtgcagtgt ctttccatgg ataatgcatt tgatttatca gtgaagatgc agaagggaaa
1261 tggggagcct cagctcacat tcagttatgg ttgactctgg gttcctatgg ccttgttgga
1321 gggggccagg ctctagaacg tctaacacag tggagaaccg aaaccccccc cccccgccac
1381 cctctcggac agttattcat tctctttcaa tctctctctc tccatctctc tctttcagtc
1441 tctctctctc aacctctttc ttccaatctc tctttctcaa tctctctgtt tccctttgtc
1501 agtctcttcc ctcccccagt ctctcttctc aatccccctt tctaacacac acacacacac
1561 acacacacac acacacacac acacacacac acacacagag tcaggccgtt gctagtcagt
1621 tctcttcttt ccaccctgtc cctatctcta ccactataga tgagggtgag gagtagggag
1681 tgcagccctg agcctgccca ctcctcatta cgaaatgact gtatttaaag gaaatctatt
1741 gtatctacct gcagtctcca ttgtttccag agtgaacttg taattatctt gttatttatt
1801 ttttgaataa taaagacctc ttaacattaa gaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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