LOCUS BC071733 2258 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens retinoic acid receptor, alpha, mRNA (cDNA clone
MGC:88071 IMAGE:5217484), complete cds.
ACCESSION BC071733
VERSION BC071733.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2258)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2258)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 166 Row: k Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 67459913.
FEATURES Location/Qualifiers
source 1..2258
/db_xref="H-InvDB:HIT000264553"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:88071 IMAGE:5217484"
/tissue_type="Blood, adult leukocytes"
/clone_lib="NIH_MGC_118"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2258
/gene="RARA"
/gene_synonym="NR1B1"
/gene_synonym="RAR"
/db_xref="GeneID:5914"
/db_xref="HGNC:HGNC:9864"
/db_xref="MIM:180240"
CDS 290..1663
/gene="RARA"
/gene_synonym="NR1B1"
/gene_synonym="RAR"
/codon_start=1
/product="retinoic acid receptor, alpha"
/protein_id="AAH71733.1"
/db_xref="GeneID:5914"
/db_xref="HGNC:HGNC:9864"
/db_xref="MIM:180240"
/translation="MYESVEVGGPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPL
RTPLWNGSNHSIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEG
CKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKK
KKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDID
LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQ
DTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDR
QDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVIT
LKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRS
SPATHSP"
BASE COUNT 467 a 746 c 641 g 404 t
ORIGIN
1 aggtgaagcc gctgagttcc cgggccccgc caggcttccc tgggagagcc gacggacccc
61 ccctcccagc acacacaact tccctgcttt tcaccgggac tggcggagcg gccggcggac
121 ttagacgcgg ggacttcagg gcagggggcg ccccctgccc gggtcaccag tcggggcgag
181 gggacgtctc ctctccccca gctgctctgc tcggatggcg ccgccggctg agtgacgggg
241 gcggcgcgca ggacttccca gctcggacct cttgccttcg aggggaaaga tgtacgagag
301 tgtagaagtg gggggtccca cccctaatcc cttcctagtg gtggattttt ataaccagaa
361 ccgggcctgt ttgctcccag agaaggggct ccccgccccg ggtccgtact ccaccccgct
421 ccggactccg ctttggaatg gctcaaacca ctccattgag acccagagca gcagttctga
481 agagatagtg cccagccctc cctcgccacc ccctctaccc cgcatctaca agccttgctt
541 tgtctgtcag gacaagtcct caggctacca ctatggggtc agcgcctgtg agggctgcaa
601 gggcttcttc cgccgcagca tccagaagaa catggtgtac acgtgtcacc gggacaagaa
661 ctgcatcatc aacaaggtga cccggaaccg ctgccagtac tgccgactgc agaagtgctt
721 tgaagtgggc atgtccaagg agtctgtgag aaacgaccga aacaagaaga agaaggaggt
781 gcccaagccc gagtgctctg agagctacac gctgacgccg gaggtggggg agctcattga
841 gaaggtgcgc aaagcgcacc aggaaacctt ccctgccctc tgccagctgg gcaaatacac
901 tacgaacaac agctcagaac aacgtgtctc tctggacatt gacctctggg acaagttcag
961 tgaactctcc accaagtgca tcattaagac tgtggagttc gccaagcagc tgcccggctt
1021 caccaccctc accatcgccg accagatcac cctcctcaag gctgcctgcc tggacatcct
1081 gatcctgcgg atctgcacgc ggtacacgcc cgagcaggac accatgacct tctcggacgg
1141 gctgaccctg aaccggaccc agatgcacaa cgctggcttc ggccccctca ccgacctggt
1201 ctttgccttc gccaaccagc tgctgcccct ggagatggat gatgcggaga cggggctgct
1261 cagcgccatc tgcctcatct gcggagaccg ccaggacctg gagcagccgg accgggtgga
1321 catgctgcag gagccgctgc tggaggcgct aaaggtctac gtgcggaagc ggaggcccag
1381 ccgcccccac atgttcccca agatgctaat gaagattact gacctgcgaa gcatcagcgc
1441 caagggggct gagcgggtga tcacgctgaa gatggagatc ccgggctcca tgccgcctct
1501 catccaggaa atgttggaga actcagaggg cctggacact ctgagcggac agccgggggg
1561 tggggggcgg gacgggggtg gcctggcccc cccgccaggc agctgtagcc ccagcctcag
1621 ccccagctcc aacagaagca gcccggccac ccactccccg tgaccgccca cgccacatgg
1681 acacagccct cgccctccgc cccggctttt ctctgccttt ctaccgacca tgtgaccccg
1741 caccagccct gcccccacct gccctcccgg gcagtactgg ggaccttccc tgggggacgg
1801 ggagggagga ggcagcgact ccttggacag aggcctgggc cctcagtgga ctgcctgctc
1861 ccacagcctg ggctgacgtc agaggccgag gccaggaact gagtgaggcc cctggtcctg
1921 ggtctcagga tgggtcctgg gggcctcgtg ttcatcaaga cacccctctg cccagctcac
1981 cacatcttca tcaccagcaa acgccaggac ttggctcccc catcctcaga actcacaagc
2041 cattgctccc cagctgggga acctcaacct cccccctgcc tcggttggtg acagaggggg
2101 tgggacaggg gcggggggtt ccccctgtac ataccctgcc ataccaaccc caggtattaa
2161 ttctcgctgg ttttgttttt attttaattt ttttgttttg atttttttaa taagaatttt
2221 cattttaagc acaaaaaaaa aaaaaaaaaa aaaaaaaa
//