LOCUS BC071657 2833 bp mRNA linear HUM 25-JUN-2004 DEFINITION Homo sapiens TAR DNA binding protein, mRNA (cDNA clone MGC:87845 IMAGE:5498250), complete cds. ACCESSION BC071657 VERSION BC071657.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2833) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2833) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 166 Row: n Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 19743843. FEATURES Location/Qualifiers source 1..2833 /db_xref="H-InvDB:HIT000264482" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:87845 IMAGE:5498250" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2833 /gene="TARDBP" /gene_synonym="TDP-43" /db_xref="GeneID:23435" /db_xref="MIM:605078" CDS 86..1330 /gene="TARDBP" /gene_synonym="TDP-43" /codon_start=1 /product="TARDBP protein" /protein_id="AAH71657.1" /db_xref="GeneID:23435" /db_xref="MIM:605078" /translation="MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYR NPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQK TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK VMSQRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVM DVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRF GGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSW GMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSASNAG SGSGFNGGFGSSMDSKSSGWGM" BASE COUNT 783 a 486 c 716 g 848 t ORIGIN 1 cggtggctgg gctgcgcttg ggtccgtcgc tgcttcggtg tccctgtcgg gcttcccagc 61 agcggcctag cgggaaaagt aaaagatgtc tgaatatatt cgggtaaccg aagatgagaa 121 cgatgagccc attgaaatac catcggaaga cgatgggacg gtgctgctct ccacggttac 181 agcccagttt ccaggggcgt gtgggcttcg ctacaggaat ccagtgtctc agtgtatgag 241 aggtgtccgg ctggtagaag gaattctgca tgccccagat gctggctggg gaaatctggt 301 gtatgttgtc aactatccaa aagataacaa aagaaaaatg gatgagacag atgcttcatc 361 agcagtgaaa gtgaaaagag cagtccagaa aacatccgat ttaatagtgt tgggtctccc 421 atggaaaaca accgaacagg acctgaaaga gtattttagt acctttggag aagttcttat 481 ggtgcaggtc aagaaagatc ttaagactgg tcattcaaag gggtttggct ttgttcgttt 541 tacggaatat gaaacacaag tgaaagtaat gtcacagcga catatgatag atggacgatg 601 gtgtgactgc aaacttccta attctaagca aagccaagat gagcctttga gaagcagaaa 661 agtgtttgtg gggcgctgta cagaggacat gactgaggat gagctgcggg agttcttctc 721 tcagtacggg gatgtgatgg atgtcttcat ccccaagcca ttcagggcct ttgcctttgt 781 tacatttgca gatgatcaga ttgcgcagtc tctttgtgga gaggacttga tcattaaagg 841 aatcagcgtt catatatcca atgccgaacc taagcacaat agcaatagac agttagaaag 901 aagtggaaga tttggtggta atccaggtgg ctttgggaat cagggtggat ttggtaatag 961 cagagggggt ggagctggtt tgggaaacaa tcaaggtagt aatatgggtg gtgggatgaa 1021 ctttggtgcg ttcagcatta atccagccat gatggctgcc gcccaggcag cactacagag 1081 cagttggggt atgatgggca tgttagccag ccagcagaac cagtcaggcc catcgggtaa 1141 taaccaaaac caaggcaaca tgcagaggga gccaaaccag gccttcggtt ctggaaataa 1201 ctcttatagt ggctctaatt ctggtgcagc aattggttgg ggatcagcat ccaatgcagg 1261 gtcgggcagt ggttttaatg gaggctttgg ctcaagcatg gattctaagt cttctggctg 1321 gggaatgtag acagtggggt tgtggttggt tggtatagaa tggtgggaat tcaaattttt 1381 ctaaactcat ggtaagtata ttgtaaaata catatgtact aagaattttc aaaattggtt 1441 tgttcagtgt ggagtatatt cagcagtatt tttgacattt ttctttagaa aaaggaagag 1501 ctaaaggaat tttataagtt ttgttacatg aaaggttgaa atattgagtg gttgaaagtg 1561 aactgctgtt tgcctgattg gtaaaccaac acactacaat tgatatcaaa aggtttctcc 1621 tgtaatattt tatccctgga cttgtcaagt gaattctttg catgttcaaa acggaaacca 1681 ttgattagaa ctacattctt taccccttgt tttaatttga accccaccat atggattttt 1741 ttccttaaga aaatctcctt ttaggagatc atggtgtcac agtgtttggt tcttttgttt 1801 tgttttttaa cacttgtctc ccctcataca caaaagtaca atatgaagcc ttcatttaat 1861 ctctgcagtt catctcattt caaatgttta tggaagaagc acttcattga aagtagtgct 1921 gtaaatattc tgccatagga atactgtcta catgctttct cattcaagaa ttcgtcatca 1981 cgcatcacag gccgcgtctt tgacggtggg tgtcccattt ttatccgcta ctctttattt 2041 catggagtcg tatcaacgct atgaacgcaa ggctgtgata tggaaccaga aggctgtctg 2101 aacttttgaa accttgtgtg ggattgatgg tggtgccgag gcatgaaagg ctagtatgag 2161 cgagaaaagg agagagcgcg tgcagagact tggtggtgca taatggatat tttttaactt 2221 ggcgagatgt gtctctcaat cctgtggctt tggtgagaga gtgtgcagag agcaatgata 2281 gcaaataatg tacgaatgtt ttttgcattc aaaggacatc cacatctgtt ggaagacttt 2341 taagtgagtt tttgttctta gataacccac attagatgaa tgtgttaagt gaaatgatac 2401 ttgtactccc cctacccctt tgtcaactgc tgtgaatgct gtatggtgtg tgttctcttc 2461 tgttactgat atgtaagtgt ggcaatgtga actgaagctg atgggctgag aacatggact 2521 gagcttgtgg tgtgctttgc aggaggactt gaagcagagt tcaccagtga gctcaggtgt 2581 ctcaaagaag ggtggaagtt ctaatgtctg ttagctaccc ataagaatgc tgtttgctgc 2641 agttctgtgt cctgtgcttg gatgcttttt ataagagttg tcattgttgg aaattcttaa 2701 ataaaactga tttaaataaa aaaaaaaaaa aagggcggcc gccctttttt tttttttttt 2761 agagctttta tatttgcgtt tattcttcat ttaacttttt aaaacactac tatagtttat 2821 taaaaaaaaa aaa //