LOCUS BC071613 5721 bp mRNA linear HUM 01-NOV-2007
DEFINITION Homo sapiens speckle-type POZ protein-like, mRNA (cDNA clone
MGC:87667 IMAGE:5275316), complete cds.
ACCESSION BC071613
VERSION BC071613.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5721)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5721)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: p Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48717262.
FEATURES Location/Qualifiers
source 1..5721
/db_xref="H-InvDB:HIT000264441"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87667 IMAGE:5275316"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5721
/gene="SPOPL"
/db_xref="GeneID:339745"
/db_xref="HGNC:HGNC:27934"
CDS 380..1558
/gene="SPOPL"
/codon_start=1
/product="speckle-type POZ protein-like"
/protein_id="AAH71613.1"
/db_xref="GeneID:339745"
/db_xref="HGNC:HGNC:27934"
/translation="MSREPTPPLPGDMSTGPIAESWCYTQVKVVKFSYMWTINNFSFC
REEMGEVLKSSTFSSGPSDKMKWCLRVNPKGLDDESKDYLSLYLLLVSCPKSEVRAKF
KFSLLNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCE
VSVVQDSVNISGHTNTNTLKVPECRLAEDLGNLWENTRFTDCSFFVRGQEFKAHKSVL
AARSPVFNAMFEHEMEESKKNRVEINDLDPEVFKEMMRFIYTGRAPNLDKMADNLLAA
ADKYALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFINRCSVLRQL
GCKDGKNWNSNQATDIMETSGWKSMIQSHPHLVAEAFRALASAQCPQFGIPRKRLKQS
"
BASE COUNT 1802 a 919 c 1131 g 1869 t
ORIGIN
1 agtcgtaact cggaagccgg agcccagacg ggcccgcggc gggggggtgg gggctgcgcg
61 ggggcgggag tggcggaggt ggccgcccct ggcggcgggt ttgtttatcc cggggaagaa
121 gtttaggagc gggagatagg gaaggagggc gggtcgggga ggaaggatgc ggttcggcgg
181 aggcggccgc cacagggact tgccgccatc acccctgctg ccaccaccgc agcctcgggc
241 tcccagggcg gacacggcca ccgcctcagc gggagaggag tctccaccag gactgaccgc
301 tgccgcccag cacgtccagg taaggtactc aactgtgtgg ggtactacat aaatcctgaa
361 agactacaat aaagtggtga tgtctcggga acccacccca cctctacctg gagatatgtc
421 tactggtccc atagcagaaa gctggtgtta cacacaggtt aaagtagtaa aattttccta
481 tatgtggacc attaataact tcagtttttg tcgagaggaa atgggtgaag tgttaaaaag
541 ttcaacattt tcatctggcc caagtgacaa aatgaaatgg tgcctgaggg taaacccaaa
601 gggattagat gatgaaagta aagactactt gtccttatat ttgcttttag tcagctgccc
661 caaaagtgaa gttcgagcaa aattcaaatt ttcccttctg aatgctaaaa gggaagaaac
721 aaaagcaatg gaaagccaaa gagcatatcg atttgtgcaa gggaaggact ggggttttaa
781 aaaattcatt agaagggact ttttgcttga tgaagctaat ggtcttttac cagatgacaa
841 gcttacatta ttttgtgagg tgagtgtggt ccaagattca gtaaacatat caggacatac
901 taatacaaat actttgaagg tgcctgagtg tcgtctagca gaagatttag gtaatctctg
961 ggaaaacaca agatttacag actgcagttt tttcgtgaga ggacaagaat ttaaagctca
1021 taaatctgtg cttgcagctc gatctccagt ttttaacgcc atgtttgaac atgaaatgga
1081 agaaagcaaa aagaatcgag tggaaataaa tgatttagac cctgaagttt ttaaagaaat
1141 gatgagattc atttacacag ggagagcacc aaaccttgac aaaatggctg acaacttgtt
1201 ggcagctgca gacaaatatg cactggaacg gctgaaggtc atgtgcgaag aagctttgtg
1261 tagtaacctc tcagtagaga atgttgcaga tacccttgtc cttgcagatt tgcacagtgc
1321 agaacagttg aaagcacaag ccatagactt tattaatagg tgcagtgtac ttcgacaact
1381 tgggtgtaaa gatgggaaaa actggaacag caaccaagca accgacataa tggaaacatc
1441 agggtggaag tccatgattc agtctcaccc tcatttagta gcagaagcct ttcgagcact
1501 agcatctgca cagtgtccac agtttggcat tccacgcaaa cggctaaaac agtcctgaaa
1561 tcttccatga acagttgaaa aatggaattg actttcactc ctccaggtcc agaaggattc
1621 taatacacaa accataagca agagttgttt ctgttatttt gtccacagaa cagaagctga
1681 aaaagcatat tgcttgcatt tcaggtggat aatttatggt ttattcttca gctttaaatt
1741 agactgatta attcacttca aggccttaaa ttatcttcaa tgacttctct tgttcatata
1801 atactttaat tttttttatt gtgccttgtc attttgacca aggctatgca ggattgcact
1861 agctccataa tgcagtaata ttgataactg aagatactaa gtttcaaaag gatcttccat
1921 tattttgcaa aaagaaaaat gaattttata gggtttgtcc tatgctatct caaagtttaa
1981 gttctcttta aaagcacttg tattggagat taccagtaat atctccaatc taagttctat
2041 aaatatggga gaaccctctt accttcaagg taagttatgg caatacactg cttcaattct
2101 aatttatttt tcatttcagg gggcaaatat gcaatgagtt ggcctagatt tttagtgaca
2161 tttatgatgt ttgtcttgta tgttaactgt ccaacaaact gtgggtttat tctaagttta
2221 caattattga gaactgattg aggttaagat ttcatgaaga aagcatgtat tgtgtggaag
2281 taattttttt ttaatttata ctgacctaca tttatacgaa gaattctgta catgttaaaa
2341 gtaaggatga ccaaatgcaa atttaatgag tgggccaatt aagaaagata catatgcact
2401 tttactgtgt aacttttgta tgctgaatgg tacatatatt tttttgcttt tgagggaatt
2461 aataaggtat aattaattgt gtcttaactt ttcaaagaaa tttttagatg gaggcaactg
2521 ggatgtttgt gataatagat gagaaagaca tccttgattg tagttaaatt ggtttggatt
2581 acagatattc attattgaat tgactcctat tttctcacac tttggaaaag acacctgaac
2641 aataaatgaa tcctggatag tctactctcc ttcaaacaat taactgatac ttgcctttgg
2701 gagatgcata caaaaggaga gaacccttag actatgtcag gtcacactag gaacctcccc
2761 tcactccccg tttttcttca ttgtgtttca gttactgtac taacattgtg gatgatactg
2821 aaattctgca taatgtgaac aggataaact atttataaac tgcttttcat gggccagttc
2881 tttattataa atgaatttta gctttaaatg catatacacg ttcagtgttt gatagttgtg
2941 ttcttaaggg aggtttgttc tggtgcattg tcctggagaa gcagaagcag tcagtgtcgg
3001 ggtaccacat ctgacttact gtggtggtga ccagtgtgct tcttaagggc aagatttata
3061 tttgaccaca agggaaaaag tgtgtcactg gaaaaaaacg catataccta tgtttgcaaa
3121 cataactatt cttcagatta aaatttgtat aatttgttta tttaatgttt gaattcagga
3181 caaaagaaaa aatgaagctt gaggtgtttt caaatagacc ttatttttgc tatctctttg
3241 ttaggtgtta actgaagcaa ttcgaatatg tccagattca tttggattca tatttacatt
3301 gaaaaaactc aactaagcat ttgttatcca caacaaccta gagtttaaaa agatcgtatt
3361 ttcacctgtc ttcattactt tctatgtagt ttcattcttt gtcgtggtaa cttaaatttg
3421 aaattggaag aatctcttgg gatagaagaa agattcttac ctggtgatgg aacttcatac
3481 ttcatcctgt gtaagagtat tatgggaagt agaaattcac ttccttaaat ccatcgtaag
3541 attgagcctc aagtttgcaa tatacaattt taaaaataca catacataca tacatatgta
3601 tacatttcca gttttaagat tttgcgaggg tcttataaga aaacaaaaat tccctcaggc
3661 tatagaatta tgttgtcata tatcagaaaa gtactgatgt atccatttat atccaatgcg
3721 caccaccggc acattgtgat ttaattcacc gcttgaatct atatttctaa ccacagtgac
3781 ttcagtaaaa ataccgtata atgaacattt cagcttcttc ttacttactc gagagtttat
3841 tgcaaatctt aaggatttta ttataaagat ttttttttta gtttggtagc acattttgta
3901 ccaaaaatgt caaacactgt gctgtaagaa tatccatgtt tgtagaaatg tccacttttc
3961 agataatata atgcctacca ttatactaac agaatcatat ggtagttgat ttattttttt
4021 atttattatg tatatttttg gtattgtggg ttcttgaggc aatgataaaa acacttaatg
4081 tattctgaca tgagtgctct aatagcctcc ttctcctcat ttttaaactg catacattac
4141 tttcaaaata ggtatagata ttctgtcccg ccttttgagc tattagcctg ttcctgtttc
4201 cctttgtcac ctaagcaagg ctttttctga gaaggtagtg aatggtttca aatgttgcat
4261 actataagaa taatcattgg gtaactgttg tttagaccaa cacttagaaa tactatattt
4321 gtgccttttc atttttaatt ttaatgtgtg ttgatatttg gagcacaaat aatgaaggtg
4381 ccataatatg gcttgccaat gttacctcct tgaatagtca tgtgtcattg tcttgaattg
4441 gtaattggag aaccttgcat gaaatatgtg atcgtgtgtg tgtgtgtgta tgcgcgtgtg
4501 tgtctgtgtg tttgtgtaca tacctgtatt tgcttggggc ttgtgtgtgg tatgttacaa
4561 agagtgaatt tctggaaata gaaatcagtt aaatgttgaa agttcaggtt agcagaaata
4621 tttcatttaa atatgcttta ctttggagga caattgatta acagaggaaa tgataatttt
4681 caaaaatgtg atcaatttac tgcatgatga aatgtgaaaa cagtgccttt ttaggacatc
4741 aattataata aaattgtttt aaaatattaa caaagatctc aaaaagttgt catgaacatt
4801 attcatttat ttttaaactg gatctaaata agagcttaga tggccaaaat tagaattaat
4861 aatataccca tttaaatttt gttcataaat ttaaaatctt aatcagaatt ctttataaaa
4921 tgtgggtcat agatatgacc cagtgttact aaaatagaac agggattgtg aaaatccagc
4981 tcaacatact taagtatact tggcttagag ccaagtatac ttgaagaggt gaattattct
5041 gacttggaca tgcatgctct ttgatggata aaataaaaat attcaattta ttcttacaaa
5101 agaaggtggg tgggtgagtg ggttcgtttt agtgttctca gattataaag acagctataa
5161 agacagcact ttccgcacac aaagtgtatt ttacaaacct tttttataca aattaatgag
5221 ctctacttta tttaagtgtt catggaatga tgtaaatttt aggtccagtt gaacaaatat
5281 tgagtgccta tcatatgcaa gactaactcc ttactaggaa tgaaatcaca cagtgtcttc
5341 tgtttgcagt atgtgaactt tatgtttgaa aagaaattat tatatttaaa tttttttgtt
5401 gtcagagttt atcattgtat actgtaaccc agtaaatttt gcattcagtt ttaaaaaatg
5461 aagatgtaac ttacctgagt ctcatttttg aaaatgaaat tctgcaaaaa ttatttaaaa
5521 attagttctt ggggaaattg attttcaaga ttcaagtgta taaaaactta tattgaactt
5581 ttcagcctcg tttttaatta gctgatgtta atgataagat acataataca tgtatcttgt
5641 tgctgaaaat attttttgca tttcaacaca ttgagttaaa ataaagttgt tactacttat
5701 tcaagaaaaa aaaaaaaaaa a
//