LOCUS BC071582 4520 bp mRNA linear HUM 25-AUG-2005
DEFINITION Homo sapiens ubiquitin specific peptidase 36, mRNA (cDNA clone
MGC:87250 IMAGE:30345255), complete cds.
ACCESSION BC071582
VERSION BC071582.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4520)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4520)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 168 Row: n Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 35250685.
FEATURES Location/Qualifiers
source 1..4520
/db_xref="H-InvDB:HIT000264411"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87250 IMAGE:30345255"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4520
/gene="USP36"
/gene_synonym="DUB1"
/db_xref="GeneID:57602"
CDS 302..3673
/gene="USP36"
/gene_synonym="DUB1"
/codon_start=1
/product="USP36 protein"
/protein_id="AAH71582.1"
/db_xref="GeneID:57602"
/translation="MPIVDKLKEALKPGRKDSADDGELGKLLASSAKKVLLQKIEFEP
ASKSFSYQLEALKSKYVLLNPKTEGASRHKSGDDPPAGRQGSEHTYESCGDGVPAPQK
VLFPTERLSLRWERVFRVGAGLHNLGNTCFLNATIQCLTYTPPLANYLLSKEHARSCH
QGSFCMLCVMQNHIVQAFANSGNAIKPVSFIRDLKKIARHFRFGNQEDAHEFLRYTID
AMQKACLNGCAKLDRQTQATTLVHQIFGGYLRSRVKCSVCKSVSDTYDPYLDVALEIR
QAANIVRALELFVKADVLSGENAYMCAKCKKKVPASKRFTIHRTSNVLTLSLKRFANF
SGGKITKDVGYPEFLNIRPYMSQNNGDPVMYGLYAVLVHSGYSCHAGHYYCYVKASNG
QWYQMNDSLVHSSNVKVVLNQQAYVLFYLRIPGSKKSPEGLISRTGSSSLPGRPSVIP
DHSKKNIGNGIISSPLTGKRQDSGTMKKPHTTEEIGVPISRNGSTLGLKSQNGCIPPK
LPSGSPSPKLSQTPTHMPTILDDPGKKVKKPAPPQHFSPRTAQGLPGTSNSNSSRSGS
QRQGSWDSRDVVLSTSPKLLATATANGHGLKGNDESAGLDRRGSSSSSPEHSASSDST
KAPQTPRSGAAHLCDSQETNCSTAGHSKTPPSGADSKTVKLKSPVLSNTTTEPASTMS
PPPAKKLALSAKKASTLWRATGNDLRPPPPSPSSDLTHPMKTSHPVVASTWPVHRARA
VSPAPQSSSRLQPPFSPHPTLLSSTPKPPGTSEPRSCSSISTALPQVNEDLVSLPHQL
PEASEPPQSPSEKRKKTFVGEPQRLGSETRLPQHIREATAAPHGKRKRKKKKRPEDTA
ASALQEGQTQRQPGSPMYRREGQAQLPAVRRQEDGTQPQVNGQQVGCVTDGHHASSRK
RRRKGAEGLGEEGGLHQDPLRHSCSPMGDGDPEAMEESPRKKKKKKRKQETQRAVEED
GHLKCPRSAKPQDAVVPESSSCAPSANGWCPGDRMGLSQAPPVSWNGERESDVVQELL
KYSSDKAYGRKVLTWDGKMSAVSQDAIEDSRQARTETVVDDWDEEFDRGKEKKIKKFK
REKRRNFNAFQKLQTRRNFWSVTHPAKAASLSYRR"
BASE COUNT 1052 a 1366 c 1249 g 853 t
ORIGIN
1 gggtattccc gaggagggtc cggggccggg ctgtcctcgc cggtctccgc cgtcccccgg
61 gctccgggcc ggtgatgggg gccgccgggg cccgctgtct gtgcaggatt caggtcaact
121 tcggagaggc tctgacgccc gctctgcggc ttcggtgttt gaacaggcca cagtccagga
181 gcgcttacat tcaggagctc cgcgtagcac ctgcccaacc aaactcagcc ctccgttaag
241 atcctggttc catgccgcag taggacagca ggcccaagtc tgcacatccc agtgatgcac
301 catgccaata gtggataagt tgaaggaggc cctgaaaccc ggccgcaagg actcggctga
361 tgatggagaa ctggggaagc ttcttgcctc ctctgccaag aaggtccttt tacagaaaat
421 cgagttcgag ccagccagca agagcttctc ctaccagctg gaggccttaa agagcaaata
481 tgtgttgctc aaccccaaaa cagagggagc tagtcgccac aagagtggag atgacccacc
541 ggccgggaga cagggcagtg agcacacgta tgagagctgt ggtgacggag tcccagcccc
601 gcagaaagtg cttttcccca cggagcgact gtctctgagg tgggagcggg tcttccgcgt
661 gggcgcagga ctccacaacc ttggcaacac ctgctttctc aatgccacca tccagtgctt
721 gacctacaca ccacctctag ccaactacct gctctccaag gagcatgctc gcagctgcca
781 ccagggaagc ttctgcatgc tgtgtgtcat gcagaaccac attgtccagg ccttcgccaa
841 cagcggcaac gccatcaagc ccgtctcctt catccgagac ctgaaaaaga tcgcccgaca
901 cttccgcttt gggaaccagg aggacgcgca tgagttcctg cggtacacca tcgacgccat
961 gcagaaagcc tgcctgaatg gctgtgccaa gttggatcgt caaacgcagg ctactacctt
1021 ggtccatcaa atttttggag ggtatctcag atcacgcgtg aagtgctccg tgtgcaagag
1081 cgtctcggac acctacgacc cctacttgga cgtcgcgctg gagatccggc aagctgcgaa
1141 tattgtgcgt gctctggaac tttttgtgaa agcagatgtc ctgagtggag agaatgccta
1201 catgtgtgct aaatgcaaga agaaggttcc agccagcaag cgcttcacca tccacagaac
1261 atccaacgtc ttaacccttt ccctcaagcg ctttgccaac ttcagcgggg ggaagatcac
1321 caaggatgta ggctatccgg aattcctcaa catacgtccg tatatgtccc agaataatgg
1381 tgatcctgtc atgtatggac tctatgctgt cctggtgcac tcgggctaca gctgccatgc
1441 cgggcactat tactgctacg tgaaggcaag caatggacag tggtaccaga tgaatgattc
1501 cttggtccat tccagcaacg tcaaggtggt tctgaaccag caggcctacg tgctgttcta
1561 tctgcgaatt ccaggctcta agaaaagtcc cgagggcctc atctccagga caggctcctc
1621 ctcccttccc ggccgcccga gtgtgattcc agatcactcc aagaagaaca tcggcaatgg
1681 gattatttcc tccccactga ctggaaagcg acaagactct gggacgatga agaagccgca
1741 caccactgaa gagattggtg tgcccatatc caggaatggc tccaccctgg gcctgaagtc
1801 ccagaacggc tgcattcctc caaagctgcc ctcggggtcc ccttccccca aactctccca
1861 gacacccaca cacatgccaa ccatcctaga cgaccctgga aagaaggtga agaagccagc
1921 tcctccacag cacttttccc ccagaactgc tcaggggctg cctgggacca gcaactcgaa
1981 tagcagcaga tctgggagcc aaaggcaggg ctcctgggac agcagggatg ttgtcctctc
2041 tacctcacct aagctcctgg ctacagccac tgccaacggg catgggctga aggggaacga
2101 cgagagcgct ggcctcgaca ggaggggctc cagcagctcc agcccagagc actcggccag
2161 cagtgactcc accaaggccc cccagacccc caggagtgga gcggcccatc tctgcgattc
2221 tcaggaaacg aactgttcca ccgctggcca ctccaaaacg ccgccaagtg gagcagattc
2281 taagacggtg aagctgaagt cccctgtcct gagcaacacc accactgagc ctgcaagcac
2341 catgtctcct ccaccagcca aaaaactggc cctttctgcc aagaaggcca gcaccctgtg
2401 gagggcgacc ggcaatgacc tccgtccacc tcccccctca ccatcctccg acctcaccca
2461 ccccatgaaa acctctcacc ccgtcgttgc ctccacttgg cccgtccata gagccagggc
2521 tgtgtcacct gctccccaat catccagccg cctgcaaccc cccttcagcc cccaccccac
2581 attgctgtcc agtaccccca agcccccagg gacgtcagaa ccacggagct gctcctccat
2641 ctcgacggcg ctgcctcagg tcaacgagga ccttgtgtct cttccacacc agttgccaga
2701 ggccagtgag cccccccaga gcccctctga gaagaggaaa aagacctttg tgggagagcc
2761 gcagaggctg ggctcagaga cgcgcctccc acagcacatc agggaggcca ctgcggctcc
2821 ccacgggaag aggaagagga agaagaagaa gcgcccggag gacacagctg ccagcgccct
2881 gcaggagggg cagacacaga gacagcctgg gagccccatg tacaggaggg agggccaggc
2941 acagctgccc gctgtcagac ggcaggaaga tggcacacag ccacaggtga atggccagca
3001 ggtgggatgt gttacggacg gccaccacgc gagcagcagg aagcggagga ggaaaggagc
3061 agaaggtctt ggtgaagaag gcggcctgca ccaggaccca cttcggcaca gctgctctcc
3121 catgggtgat ggtgatccag aggccatgga agagtctcca aggaaaaaga aaaagaaaaa
3181 aagaaagcag gagacacagc gggcagtaga agaggatggg catctcaaat gcccaaggag
3241 tgccaagccc caagatgctg ttgtccccga gtccagcagc tgcgcaccat ccgcgaatgg
3301 ctggtgtcct ggggaccgca tggggctgag ccaggcccct cctgtgtctt ggaatggaga
3361 gcgggagtct gatgtggtcc aggaactgct caaatactca tctgataaag cttacgggag
3421 aaaagttctg acctgggatg gcaagatgtc ggcggtcagt caggatgcta ttgaagacag
3481 cagacaggcc cggactgaga ccgtggttga tgactgggac gaagagtttg accgagggaa
3541 ggaaaagaaa attaaaaaat ttaagagaga gaagaggaga aacttcaacg ccttccagaa
3601 acttcagact cgacggaact tctggtctgt gactcaccca gcaaaggctg ccagcctcag
3661 ctatcgccgc tgactgtgcc cctgtggaag gagcctcctg gagacaaggc gtcccttccc
3721 gggagctgtc ggtctggatc tgagggagct ctctgtgtgg gctctgctgc gctgggagcc
3781 tgtcacggta ggagctctcc cggtaccagt gtccacagac cgcccaacac agaggctttg
3841 aggcttctct agatcggaac ctctttggtg acattcccga ccagccctgc aagagaaacg
3901 acagtgtgtg tgtgagcaga ggtggccgca cacctgctgg acatctttgc caggctgtgc
3961 cttctcatgt ttcatagaca gtggtctgtg ctggcagagg ctgctgcccc tggttggggc
4021 tatcaggaga gtgggggatg gtggccacat gtcccccagg tggtctcccg gtgcatagct
4081 ggtggctctg ggcaagccat cccttgcttc tcggggctga cgccaccgtt gtgtccgagc
4141 ccgccctccc ctgcttcctc agcgggaccc cttcatctgt tggccttacc tgtcctcaga
4201 aaggaagagg tgaccccacc cagccacctc tcccttttat ggaactcgag agggtggccc
4261 tactgtgcac cccttccttg tgagtagctc tcaactgtcc tggagagcag aggctatttg
4321 gggtcggagg agccctcgat acctgcgaat acatctgctt tccaggctgc tgtttattct
4381 gagacgactg tgctgtagct tcccttgcag ctgcaataac ccgcaggtct tcactgaggt
4441 ggaggctttg gggtagaatt ctccatttat tttactactt aatacaaaac atttattttt
4501 gaccaaaaaa aaaaaaaaaa
//