LOCUS BC071574 3874 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens protein tyrosine phosphatase, non-receptor type 9,
mRNA (cDNA clone MGC:87169 IMAGE:5276190), complete cds.
ACCESSION BC071574
VERSION BC071574.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3874)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3874)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: p Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18375663.
FEATURES Location/Qualifiers
source 1..3874
/db_xref="H-InvDB:HIT000264403"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87169 IMAGE:5276190"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3874
/gene="PTPN9"
/gene_synonym="MEG2"
/db_xref="GeneID:5780"
/db_xref="MIM:600768"
CDS 467..2218
/gene="PTPN9"
/gene_synonym="MEG2"
/codon_start=1
/product="PTPN9 protein"
/protein_id="AAH71574.1"
/db_xref="GeneID:5780"
/db_xref="MIM:600768"
/translation="MAPELTPEEEQATKQFLEEINKWTVQYNVSPLSWNVAVKFLMAR
KFDVLRAIELFHSYRETRRKEGIVKLKPHEEPLRSEILSGKFTILNVRDPTGASIALF
TARLHHPHKSVQHVVLQALFYLLDRAVDSFETQRNGLVFIYDMCGSNYADFELDLGKK
VLNLLKGAFPARLKKVLIVGAPIWFRVPYSIISLLLKDKVRERIQILKTSEVTQHLPR
ECLPENLGGYVKIDLATWNFQFLPQVNGHPDRFDEIILFSLPPALDWDSVHVPGPHAM
TIQELVDYVNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRV
KLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTT
RFEEGGRRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQV
THFQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVSNMGARSKGQCPEPPIVVHCSAG
IGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAE
KEGMVSSGQNLLAVESQ"
BASE COUNT 945 a 968 c 958 g 1003 t
ORIGIN
1 agcccggctg aggcagccgc gcaggtcgca gggccagcgt ccgcgaggac ggcccggctg
61 ggcggccccg agctctgtgg cgctgtggag gagcgggagc gcggccgaga aagcggggcg
121 ccgagggggt cggcggcctt cgggaaattt ccgccgaccc ttcgctcctg gctctaaaag
181 ttcctgattt cctatttcct tttaaatccc gagtggctgt tagctcttcg cctgcacttt
241 ttcttcccca ggagataagg gggagtgtga ggaacggagc gaataatata aaaaaggatt
301 tcatcccgga agagagcggc agttcggaga gatttttctt aaggaagcag aagcggcgtt
361 tgcggccgct gcaggcgccg ggccctgccg gccacactat gcgcgagccg gccccaggct
421 gctgaggcgc ggggacgcgg aagcggaggc cgcgccccgg cccgacatgg cgccggagct
481 gaccccggag gaggagcagg ctaccaagca gtttctcgaa gagattaaca agtggacagt
541 tcagtacaat gtttccccgc tgtcttggaa tgtggctgtc aagttcctca tggcaaggaa
601 gtttgatgtg ctccgtgcca tagaattgtt ccactcctac agagaaactc gaaggaagga
661 aggcattgta aagctgaaac ctcatgagga acctcttcgt tctgagatcc tcagtggaaa
721 attcaccatc ttaaatgttc gggacccaac aggagcctcc attgccctct ttactgccag
781 gttgcatcat ccccacaagt cagtccaaca tgtggtactt caggctctgt tttacttgct
841 agacagagct gtggatagct ttgaaactca gaggaatgga ctggtgttta tctatgacat
901 gtgtggttct aattatgccg actttgagct ggatcttggc aagaaagtcc taaacctgct
961 gaagggagca tttccagctc gtttgaagaa ggtgctgatt gtgggggcac ccatatggtt
1021 ccgagtgccc tattccatca tcagtctcct cctgaaggac aaagtccggg agaggattca
1081 aatattaaag acatctgagg tcacgcagca tctgcccagg gagtgtcttc cagaaaacct
1141 gggtgggtac gtcaaaattg atctcgccac ttggaatttc cagttcctac cccaggtgaa
1201 cggccaccca gatcgcttcg atgagatcat cctgttctcc ctccctcctg ccttagactg
1261 ggactcagta catgttccag gtccccatgc tatgaccatc caagagttgg tggactatgt
1321 taatgccagg caaaagcaag gaatctatga ggaatatgaa gacattcgtc gtgagaaccc
1381 tgttggcact ttccactgtt ccatgtctcc aggaaaccta gagaaaaacc gttatgggga
1441 tgtaccctgc ctggaccaaa ctagagtgaa gctaacaaag cgaagtggcc atactcagac
1501 agattacatc aatgccagtt tcatggatgg ctacaagcag aagaatgctt acattggcac
1561 acaaggtcct ttggagaata cctatcgtga tttctggctc atggtatggg agcaaaaagt
1621 cttggtgatt gtcatgacca cccgctttga ggaaggcggc aggagaaagt gtggccagta
1681 ctggccttta gaaaaagact ctcggatccg atttggcttc ctcacagtga ccaatctagg
1741 cgtggagaac atgaatcatt ataagaaaac aacgctagaa attcacaaca cagaggaacg
1801 gcagaaacgc caggtgaccc acttccagtt cttgagctgg ccagactatg gtgtcccttc
1861 ctcagcagct tccctcattg acttcttgag agtggtcaga aaccagcaga gtctggctgt
1921 gagcaacatg ggagcacgct ccaaagggca gtgccctgag ccacccattg tggtccattg
1981 cagtgcaggc attggcagga caggtacctt ctgctcactg gacatctgcc tggcacagct
2041 ggaggagctt ggcaccctta atgtgttcca gacggtgtca cgcatgagga cccagagggc
2101 cttcagcatc cagacccctg agcagtacta tttttgctac aaggccatcc tggagttcgc
2161 agagaaggag ggcatggtat cctctggcca aaacctgctg gccgtggaga gtcagtaact
2221 ctcctacgaa cctcctacct gttggccagc cttccttaaa ctaccctgga caccgctgag
2281 cctataggtt gccatcagtt acgctgaagc catgggtcaa cttctttctt gtgtctccca
2341 gcacacgtgt gcacgcaagg cagcctttcc ctttggctag ataaatgtgg tgaaattgcc
2401 actagaaagg gccagtagca atgtgttctt aattcctagc atctgctatc aaactgtgcc
2461 ttattaaaac caaattgtgg ctattgattt ttgctagggt ccccgaggta agtggggaag
2521 gaacctccct cctcctttct ccgccattct ttttctgagg tctcctgtct cccactcctt
2581 ccctttccta ggattttatg gggaggtttg atgagcattt gcctttctcc ccagagagct
2641 tgaccaagtt acatattcta gagatcgtcc tgagtgccaa gcacgtttat aagtagggcg
2701 tgtattccag tcctttctgt cattctgtgt gtgtgtgtgt gcacttatgt gtatgggtcc
2761 atatgtacgt gtgtatataa tatatattgt atgtgataat atgatcgtat tctataaata
2821 catatacaca cgatactcct ttccagaagt tcctggggct ccgtgttgca gttcaggact
2881 ccttgcttct tggaccctac tatttatcct ggactagctt gggttggtga tcatgtctcc
2941 tcttgtcagg ctacagagtg gtggaagagg acacacacac atctcctcca tgttcctgcc
3001 acagggcccc ttccttaagt aatgacttat ctccttccag ttgccacctg ttggagccaa
3061 gaatgtatta gtttgtggtg acactgggtt agctcagcat ggatttccct tatccgatga
3121 tttttctaca tttacttggc caatttgggg aacagacctc cactgtgatt ccatactctc
3181 tctttgcttt cactatccca gggatgggag gcggagggta gagatgaact cactgagcag
3241 ccagagccaa atgcaatcgg tacgaatctt agaaggaagg agggggagcc caggtatgag
3301 aaagaaaaaa ccactaagaa aatacctcac tgggaggatg agctggggcc ctttttcttt
3361 tgctggatgg ttcctttatg cagcttggcc ctgtctaccg agatgcccat ctcttcctgc
3421 ctgctagcct gctagaccct caaactgggt gggttctgtg tcaataaaaa gcttcacccc
3481 ctggctgagt gaggtggtcc cctgcaatca ctgtttgtcc cctacccacc caacctgtcc
3541 ctgcctgctc ccagcccact catccttatg tgctagggat aaatcaagag tcctcagcac
3601 tccacattcc caaaaaatcc caggaactcc taaaccttcc cctgtgacag aagatgaggt
3661 tggcagctga tcagacctca ataattttat actgtaataa gctctttgaa tgtgtatatt
3721 attatttttt acaatcattt cattttgtat ttaatatcaa tggactgagt ctgattcaga
3781 aaataattgt aatgttcata ttcaatatct tacagtgata cagttttgta tttacatata
3841 aatataccga catgatcaaa aaaaaaaaaa aaaa
//