LOCUS       BC071563                3536 bp    mRNA    linear   HUM 18-MAR-2009
DEFINITION  Homo sapiens chromosome 1 open reading frame 55, mRNA (cDNA clone
            MGC:87025 IMAGE:5261192), complete cds.
ACCESSION   BC071563
VERSION     BC071563.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3536)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 3536)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUN-2004) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
            cDNA Library Preparation: Michael J. Brownstein (NHGRI) &  Shiraki
            Toshiyuki and Piero Carninci (RIKEN)
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 167 Row: j Column: 18
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 40255124
            The stop codon of the CDS annotated on this record is located > 55
            bases upstream of a splice junction, and therefore the mRNA is
            predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES             Location/Qualifiers
     source          1..3536
                     /db_xref="H-InvDB:HIT000264392"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:87025 IMAGE:5261192"
                     /tissue_type="Brain, hippocampus"
                     /clone_lib="NIH_MGC_95"
                     /lab_host="DH10B"
                     /note="Vector: pBluescriptR"
     gene            1..3536
                     /gene="C1orf55"
                     /gene_synonym="dJ671D7.1"
                     /gene_synonym="RP4-671D7.1"
                     /db_xref="GeneID:163859"
                     /db_xref="HGNC:HGNC:26643"
     CDS             32..1387
                     /gene="C1orf55"
                     /gene_synonym="dJ671D7.1"
                     /gene_synonym="RP4-671D7.1"
                     /codon_start=1
                     /product="C1orf55 protein"
                     /protein_id="AAH71563.1"
                     /db_xref="GeneID:163859"
                     /db_xref="HGNC:HGNC:26643"
                     /translation="MAEAAALVWIRGPGFGCKAVRCASGRCTVRDFIHRHCQDQNVPV
                     ENFFVKCNGALINTSDTVQHGAVYSLEPRLCGGKGGFGSMLRALGAQIEKTTNREACR
                     DLSGRRLRDVNHEKAMAEWVKQQAEREAEKEQKRLERLQRKLVEPKHCFTSPDYQQQC
                     HEMAERLEDSVLKGMQAASSKMVSAEISENRKRQWPTKSQTDRGASAGKRRCFWLGME
                     GLETAEGSNSESSDDDSEEAPSTSGMGFHAPKIGSNGVEMAAKFPSGSQRARVVNTDH
                     GSPEQLQIPVTDSGRHILEDSCAELGESKEHMESRMVTETEETQEKKAESKEPIEEEP
                     TGAGLNKDKETEERTDGERVAEVAPEERENVAVAKLQESQPGNAVIDKETIDLLAFTS
                     VAELELLGLEKLKCELMALGLKCGGTLQERAARLFSVRGLAKEQIDPALFAKPLKGKK
                     K"
BASE COUNT          947 a          658 c          783 g         1148 t
ORIGIN      
        1 agggaggctt gaggttcggg tagtcggtga catggcggag gccgcggcgc tggtgtggat
       61 tcgcggccct ggcttcgggt gcaaggcggt gcggtgtgcc tcgggtcggt gcaccgtccg
      121 ggattttatc caccggcact gccaagatca gaatgttcca gtggaaaact tctttgtgaa
      181 atgcaatgga gcactcatta acaccagtga cacagtgcag catggagctg tttatagttt
      241 ggaacccaga ctttgcggtg gaaaaggagg ttttggatct atgctccgag cacttggtgc
      301 tcagattgag aagacaacca atcgagaagc ttgtcgggat ctcagtggaa ggagactacg
      361 cgatgtcaat catgaaaaag caatggctga atgggtaaaa caacaagccg agcgagaggc
      421 tgaaaaggag cagaagcggc tggagcgact gcagcggaag cttgtagaac ccaagcactg
      481 cttcaccagc cccgactacc agcagcagtg ccatgagatg gctgagcgtc tggaggattc
      541 cgtcctcaaa ggtatgcagg ctgcctccag caagatggtt tcagcagaaa tcagtgagaa
      601 tcggaaacgg caatggccta ctaaatctca aacagacaga ggagccagtg cgggaaagag
      661 gagatgcttc tggttgggca tggagggact agagactgca gaagggtcca actctgagag
      721 ttcagatgat gacagtgaag aagcaccaag cacttcagga atgggtttcc atgctccaaa
      781 aattggtagc aatggtgtcg agatggcagc caaatttccc agtggttctc agagggcgag
      841 agtagtgaat acagaccatg gatcaccaga acaactgcag atcccggtga ctgactctgg
      901 gaggcatatt ttagaagact catgtgctga gctgggggag tccaaagagc acatggaaag
      961 caggatggtt acagaaacag aagagaccca ggagaagaag gcagagagta aagaacccat
     1021 agaagaggag cccactgggg ctggactgaa taaggataaa gagacagaag aaaggactga
     1081 tggggaaaga gttgctgagg tagcacctga agaaagggaa aacgttgccg ttgccaaact
     1141 gcaggaaagc cagccaggaa acgcagttat tgataaggaa actatagatt tattggcgtt
     1201 cacctctgtt gcagaactgg agttgctggg tttggagaag ctcaaatgtg aactgatggc
     1261 ccttggactg aaatgtgggg gcactctgca ggagcgggca gcaagactct tctctgtcag
     1321 aggactggca aaggagcaaa ttgacccggc tttatttgcc aagcctttga aagggaagaa
     1381 aaaatgagta tcatcagagc tgattcctat ttgtttatag tgtctaccat ttacaacctg
     1441 cataatgtgg actcttgacc agtattcctg ttgatattaa aagctaactt tttagtaacc
     1501 caattctaac tatccccttt ttccttgtca gggctgtaga attaatgtct gaaaccatct
     1561 gggccttaaa ttttctttgt ctggttttct atagtgtatt taataaatat agggctattc
     1621 acattttttg gtttgatctt ggtgtcattt aggtaatgaa tctatccaag aaatctatcc
     1681 ttttggccca ggttatcaaa tttgtagaca taaggttatt tataatggtc ccttcttacc
     1741 cttttaatgt ctttaggagc tgtgttgata atttcctttt cattatgata ctggtaattt
     1801 ctgttctcac tttcctaatc aggttgggta ggggtttatc agttttactg atctgacttt
     1861 ttattttatt ttattttttt tgagacagtc ttacactgtc tcccaggctg gagtgcagtg
     1921 gcgcgatctc ggcttactgc aagctctgcc ttccgggttc atgccattct cctgcctcag
     1981 cctccccagt agctgggact acaggctccc accaccacgc ccggctaatt ttttatattt
     2041 ttagtggaga ctgggtttca ctgtgttagc caggatggtc tcgatctctt tacctcgtgg
     2101 tccacccgcc tcagcctccc agagtgctgg gattacaggc gtgagccacc gtgcctggcc
     2161 gacgatataa cttttaaaga accaaccttt ggttttattt ttctcaattg tttatataat
     2221 taatttctgt tattttcttt cttctattta gcttgagtct cctttgatct tttttcttta
     2281 gttccttaag ataagcctta ggtcattgat cttagacgtt atttaaaata catatttaaa
     2341 gctatacatt ttcttttaag cattacttta gttgcgactt tacaatttta ttatgtcgta
     2401 tttttattat tcagttctaa ttttcttttt tttttctttt tgagatggaa tttcgctttt
     2461 gttgcccagg ctagagtgca atggtacgat ctcagctcac tgcaacctct gcctcctggg
     2521 ttcaagcgat tctcctgcct cagcctcctc agtagctggg attacaggct ccagccacca
     2581 tgcctggcta atttttgtat ttttagtaga gatggggttt caccacattg gcctgggcaa
     2641 tgtatagtga gaccatgtct ctaagaaaaa caatatgtaa tttgaattgt tgggttaata
     2701 tgttttgtaa tatcgatgag attaagtggt tgatagtatt gttcagatct tctatgtctt
     2761 tactgatcct tttgtttatt tctatcaggt gctgagaaag gatgttaaaa tcttcaatta
     2821 tgattgtgga attgtctatt tcttaaattc taccagtttt tgtatgaagc tctaataact
     2881 tatgtcttcc taatgtattg accattttat cattatgaaa tttccctctg tctctggtaa
     2941 tttgggtttg aaatctactt tatcttatgt gaatatagcc actgcagcct tcttaagctt
     3001 agtgtttgca cagtatacct ctttctatta atttactttg tgcttctgtg cctatttaaa
     3061 gtagtttctt taaacaacat atacttgaga cttgcatttt tatctgttct ctctgtatct
     3121 tttaataagt ttaacattaa atgtaattat taataggttt ctaatttaca tgtttcctgt
     3181 ttagataaga ttattttata attgtatttt aatttattgg ctctttagct atactgtttt
     3241 aataattttt ttaagttgga tgttctagtg attacaatat acattcttaa tttttcagtc
     3301 tacctagagt tgatgtgcca cttcacataa aatgtagaaa tcttgtaagt atgtacatcc
     3361 atttatcata cctgtctttt atgctgtagt tgtcatacat attaaatcta catatttaaa
     3421 tattgtaagt cctgtcataa gttacaattt ctgctttaaa taatgatatg tattttaaag
     3481 aaattaagag gaaaaaataa aatcttttgt atttattcac aaaaaaaaaa aaaaaa
//