LOCUS BC071563 3536 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens chromosome 1 open reading frame 55, mRNA (cDNA clone MGC:87025 IMAGE:5261192), complete cds. ACCESSION BC071563 VERSION BC071563.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3536) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3536) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 167 Row: j Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40255124 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..3536 /db_xref="H-InvDB:HIT000264392" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:87025 IMAGE:5261192" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3536 /gene="C1orf55" /gene_synonym="dJ671D7.1" /gene_synonym="RP4-671D7.1" /db_xref="GeneID:163859" /db_xref="HGNC:HGNC:26643" CDS 32..1387 /gene="C1orf55" /gene_synonym="dJ671D7.1" /gene_synonym="RP4-671D7.1" /codon_start=1 /product="C1orf55 protein" /protein_id="AAH71563.1" /db_xref="GeneID:163859" /db_xref="HGNC:HGNC:26643" /translation="MAEAAALVWIRGPGFGCKAVRCASGRCTVRDFIHRHCQDQNVPV ENFFVKCNGALINTSDTVQHGAVYSLEPRLCGGKGGFGSMLRALGAQIEKTTNREACR DLSGRRLRDVNHEKAMAEWVKQQAEREAEKEQKRLERLQRKLVEPKHCFTSPDYQQQC HEMAERLEDSVLKGMQAASSKMVSAEISENRKRQWPTKSQTDRGASAGKRRCFWLGME GLETAEGSNSESSDDDSEEAPSTSGMGFHAPKIGSNGVEMAAKFPSGSQRARVVNTDH GSPEQLQIPVTDSGRHILEDSCAELGESKEHMESRMVTETEETQEKKAESKEPIEEEP TGAGLNKDKETEERTDGERVAEVAPEERENVAVAKLQESQPGNAVIDKETIDLLAFTS VAELELLGLEKLKCELMALGLKCGGTLQERAARLFSVRGLAKEQIDPALFAKPLKGKK K" BASE COUNT 947 a 658 c 783 g 1148 t ORIGIN 1 agggaggctt gaggttcggg tagtcggtga catggcggag gccgcggcgc tggtgtggat 61 tcgcggccct ggcttcgggt gcaaggcggt gcggtgtgcc tcgggtcggt gcaccgtccg 121 ggattttatc caccggcact gccaagatca gaatgttcca gtggaaaact tctttgtgaa 181 atgcaatgga gcactcatta acaccagtga cacagtgcag catggagctg tttatagttt 241 ggaacccaga ctttgcggtg gaaaaggagg ttttggatct atgctccgag cacttggtgc 301 tcagattgag aagacaacca atcgagaagc ttgtcgggat ctcagtggaa ggagactacg 361 cgatgtcaat catgaaaaag caatggctga atgggtaaaa caacaagccg agcgagaggc 421 tgaaaaggag cagaagcggc tggagcgact gcagcggaag cttgtagaac ccaagcactg 481 cttcaccagc cccgactacc agcagcagtg ccatgagatg gctgagcgtc tggaggattc 541 cgtcctcaaa ggtatgcagg ctgcctccag caagatggtt tcagcagaaa tcagtgagaa 601 tcggaaacgg caatggccta ctaaatctca aacagacaga ggagccagtg cgggaaagag 661 gagatgcttc tggttgggca tggagggact agagactgca gaagggtcca actctgagag 721 ttcagatgat gacagtgaag aagcaccaag cacttcagga atgggtttcc atgctccaaa 781 aattggtagc aatggtgtcg agatggcagc caaatttccc agtggttctc agagggcgag 841 agtagtgaat acagaccatg gatcaccaga acaactgcag atcccggtga ctgactctgg 901 gaggcatatt ttagaagact catgtgctga gctgggggag tccaaagagc acatggaaag 961 caggatggtt acagaaacag aagagaccca ggagaagaag gcagagagta aagaacccat 1021 agaagaggag cccactgggg ctggactgaa taaggataaa gagacagaag aaaggactga 1081 tggggaaaga gttgctgagg tagcacctga agaaagggaa aacgttgccg ttgccaaact 1141 gcaggaaagc cagccaggaa acgcagttat tgataaggaa actatagatt tattggcgtt 1201 cacctctgtt gcagaactgg agttgctggg tttggagaag ctcaaatgtg aactgatggc 1261 ccttggactg aaatgtgggg gcactctgca ggagcgggca gcaagactct tctctgtcag 1321 aggactggca aaggagcaaa ttgacccggc tttatttgcc aagcctttga aagggaagaa 1381 aaaatgagta tcatcagagc tgattcctat ttgtttatag tgtctaccat ttacaacctg 1441 cataatgtgg actcttgacc agtattcctg ttgatattaa aagctaactt tttagtaacc 1501 caattctaac tatccccttt ttccttgtca gggctgtaga attaatgtct gaaaccatct 1561 gggccttaaa ttttctttgt ctggttttct atagtgtatt taataaatat agggctattc 1621 acattttttg gtttgatctt ggtgtcattt aggtaatgaa tctatccaag aaatctatcc 1681 ttttggccca ggttatcaaa tttgtagaca taaggttatt tataatggtc ccttcttacc 1741 cttttaatgt ctttaggagc tgtgttgata atttcctttt cattatgata ctggtaattt 1801 ctgttctcac tttcctaatc aggttgggta ggggtttatc agttttactg atctgacttt 1861 ttattttatt ttattttttt tgagacagtc ttacactgtc tcccaggctg gagtgcagtg 1921 gcgcgatctc ggcttactgc aagctctgcc ttccgggttc atgccattct cctgcctcag 1981 cctccccagt agctgggact acaggctccc accaccacgc ccggctaatt ttttatattt 2041 ttagtggaga ctgggtttca ctgtgttagc caggatggtc tcgatctctt tacctcgtgg 2101 tccacccgcc tcagcctccc agagtgctgg gattacaggc gtgagccacc gtgcctggcc 2161 gacgatataa cttttaaaga accaaccttt ggttttattt ttctcaattg tttatataat 2221 taatttctgt tattttcttt cttctattta gcttgagtct cctttgatct tttttcttta 2281 gttccttaag ataagcctta ggtcattgat cttagacgtt atttaaaata catatttaaa 2341 gctatacatt ttcttttaag cattacttta gttgcgactt tacaatttta ttatgtcgta 2401 tttttattat tcagttctaa ttttcttttt tttttctttt tgagatggaa tttcgctttt 2461 gttgcccagg ctagagtgca atggtacgat ctcagctcac tgcaacctct gcctcctggg 2521 ttcaagcgat tctcctgcct cagcctcctc agtagctggg attacaggct ccagccacca 2581 tgcctggcta atttttgtat ttttagtaga gatggggttt caccacattg gcctgggcaa 2641 tgtatagtga gaccatgtct ctaagaaaaa caatatgtaa tttgaattgt tgggttaata 2701 tgttttgtaa tatcgatgag attaagtggt tgatagtatt gttcagatct tctatgtctt 2761 tactgatcct tttgtttatt tctatcaggt gctgagaaag gatgttaaaa tcttcaatta 2821 tgattgtgga attgtctatt tcttaaattc taccagtttt tgtatgaagc tctaataact 2881 tatgtcttcc taatgtattg accattttat cattatgaaa tttccctctg tctctggtaa 2941 tttgggtttg aaatctactt tatcttatgt gaatatagcc actgcagcct tcttaagctt 3001 agtgtttgca cagtatacct ctttctatta atttactttg tgcttctgtg cctatttaaa 3061 gtagtttctt taaacaacat atacttgaga cttgcatttt tatctgttct ctctgtatct 3121 tttaataagt ttaacattaa atgtaattat taataggttt ctaatttaca tgtttcctgt 3181 ttagataaga ttattttata attgtatttt aatttattgg ctctttagct atactgtttt 3241 aataattttt ttaagttgga tgttctagtg attacaatat acattcttaa tttttcagtc 3301 tacctagagt tgatgtgcca cttcacataa aatgtagaaa tcttgtaagt atgtacatcc 3361 atttatcata cctgtctttt atgctgtagt tgtcatacat attaaatcta catatttaaa 3421 tattgtaagt cctgtcataa gttacaattt ctgctttaaa taatgatatg tattttaaag 3481 aaattaagag gaaaaaataa aatcttttgt atttattcac aaaaaaaaaa aaaaaa //