LOCUS BC070364 1571 bp mRNA linear HUM 11-MAY-2004
DEFINITION Homo sapiens T cell receptor alpha locus, mRNA (cDNA clone
MGC:88373 IMAGE:4693137), complete cds.
ACCESSION BC070364
VERSION BC070364.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1571)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1571)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 57 Row: f Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction.
FEATURES Location/Qualifiers
source 1..1571
/db_xref="H-InvDB:HIT000264319"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:88373 IMAGE:4693137"
/tissue_type="Lung"
/clone_lib="NIH_MGC_77"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1571
/gene="TRA@"
/gene_synonym="TCRA"
/gene_synonym="TRA"
/db_xref="GeneID:6955"
/db_xref="MIM:186880"
CDS 176..997
/gene="TRA@"
/gene_synonym="TCRA"
/gene_synonym="TRA"
/codon_start=1
/product="TRA@ protein"
/protein_id="AAH70364.1"
/db_xref="GeneID:6955"
/db_xref="MIM:186880"
/translation="MLLLLVPVLEVIFTLGGTRAQSVTQLGSHVSVSEGALVLLGCNY
SSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM
SDAAEYFCAVVNNAGNMLTFGGGTRLMVKPHIQNPDPAVYQLRDSKSSDKSVCLFTDF
DSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDT
FFPSPESSCDVKLVEKSFETDTNLNFQNLSVIGFRILLLKVAGFNLLMTLRLWSS"
BASE COUNT 381 a 442 c 348 g 400 t
ORIGIN
1 gtcagaacac atccaggctc cttaagagaa agcctttctt taaccatttt tgaaaccctt
61 caaaggcaga gacttgtcca gcctaacctg cctgctgctc ctagctcctg aggctcaggg
121 cccttggctt ctgtccgctc tgctcagggc cctccagcgt ggccactgct cagccatgct
181 cctgctgctc gtcccagtgc tcgaggtgat ttttaccctg ggaggaacca gagcccagtc
241 ggtgacccag cttggcagcc acgtctctgt ctctgaagga gccctggttc tgctggggtg
301 caactactca tcgtctgttc caccatatct cttctggtat gtgcaatacc ccaaccaagg
361 actccagctt ctcctgaagt acacatcagc ggccaccctg gttaaaggca tcaacggttt
421 tgaggctgaa tttaagaaga gtgaaacctc cttccacctg acgaaaccct cagcccatat
481 gagcgacgcg gctgagtact tctgtgctgt ggtcaataat gcaggcaaca tgctcacctt
541 tggaggggga acaaggttaa tggtcaaacc ccatatccag aaccctgacc ctgccgtgta
601 ccagctgaga gactctaaat ccagtgacaa gtctgtctgc ctattcaccg attttgattc
661 tcaaacaaat gtgtcacaaa gtaaggattc tgatgtgtat atcacagaca aaactgtgct
721 agacatgagg tctatggact tcaagagcaa cagtgctgtg gcctggagca acaaatctga
781 ctttgcatgt gcaaacgcct tcaacaacag cattattcca gaagacacct tcttccccag
841 cccagaaagt tcctgtgatg tcaagctggt cgagaaaagc tttgaaacag atacgaacct
901 aaactttcaa aacctgtcag tgattgggtt ccgaatcctc ctcctgaaag tggccgggtt
961 taatctgctc atgacgctgc ggctgtggtc cagctgagat ctgcaagatt gtaagacagc
1021 ctgtgctccc tcgctccttc ctctgcatcg cccctcttct ccctctccaa acagagggaa
1081 ctctcctacc cccaaggagg tgaaagctgc taccacctct gtgccccccc ggcaatgcca
1141 ccaactggat cctacccgaa tttatgatta agattgctga agagctgcca aacactgctg
1201 ccaccccctc tgttccctta ttgctgcttg tcactgcctg acattcacgg cagaggcaag
1261 gctgctgcag cctcccctgg ctgtgcacat tccctcctgc tccccagaga ctgcctccgc
1321 catcccacag atgatggatc ttcagtgggt tctcttgggc tctaggtcct gcagaatgtt
1381 gtgaggggtt tatttttttt taatagtgtt cataaagaaa tacatagtat tcttcttctc
1441 aagacgtggg gggaaattat ctcattatcg aggccctgct atgctgtgta tctgggcgtg
1501 ttgtatgtcc tgctgccgat gccttcatta aaatgatttg gaagagcaaa aaaaaaaaaa
1561 aaaaaaaaaa a
//